CFinderM000568's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
nuclear chromosome,0.00196752GO:0000228
Mismatch_repair0.016837073KEGG
Mismatch_repair0.039433867KEGG
mRNA_surveillance_pathway0.049065346KEGG

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000020G1730-- (-)
PH01000087G0110Protein kinase superfamily proteinAT3G09010 (8.00E-109)
PH01000229G0090relative of early flowering 6AT3G48430 (4.00E-105)
PH01000393G0240BRCT domain-containing DNA repair proteinAT4G03130 (9.40E-32)
PH01000942G0150-- (-)
PH01001533G0120-AT5G25580 (6.30E-59)
PH01002157G0270Tetratricopeptide repeat (TPR)-like superfamily proteinAT4G37210 (5.90E-61)
PH01002785G0080cleavage and polyadenylation specificity factor 73-IAT1G61010 (0.00E+00)
PH01002923G0150MUTS homolog 2AT3G18524 (0.00E+00)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000567C2H2 Transcription_Regulator(from PlantTFDB)
Peroxisome
Mismatch_repair
details
CFinderM000940nucleic acid binding,
Ribosome_biogenesis_in_eukaryotes
details
CFinderM000950ER to Golgi vesicle-mediated transport,
Mismatch_repair
Golgi membrane,
cis-Golgi network,
SNARE_interactions_in_vesicular_transport
Mismatch_repair
details
CFinderM001166DNA_replication
Nucleotide_excision_repair
Mismatch_repair
Riboflavin_metabolism
histone acetylation,
chromatin modification,
chromatin silencing at telomere,
details
CFinderM001427outer membrane,
RLK-Pelle_DLSV (from iTAK)
Protein_processing_in_endoplasmic_reticulum
details
CFinderM001440Mismatch_repair
nucleotide-excision repair,
Mismatch_repair
nuclear pore,
nucleobase-containing compound metabolic process,
details
CFinderM001465cellular_homeostasis
mitochondrial outer membrane,
Peroxisome
RNA methylation,
Mismatch_repair
Mismatch_repair
C2H2 Transcription_Regulator(from PlantTFDB)
RNA_degradation
mismatched DNA binding,
O-methyltransferase activity,
hydrolase_activity,_acting_on_acid_anhydrides
RNA methyltransferase activity,
details

4.Expression profilings


Show details about module gene expression profiling