|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | nicotinate nucleotide salvage, | 0.004687793 | GO:0019358 | | diphosphomevalonate decarboxylase activity, | 0.006794005 | GO:0004163 | | nicotinate phosphoribosyltransferase activity, | 0.006794005 | GO:0004516 | | nicotinate-nucleotide diphosphorylase (carboxylating) activity, | 0.006794005 | GO:0004514 | | NAD biosynthetic process, | 0.008588916 | GO:0009435 | | Nicotinate_and_nicotinamide_metabolism | 0.01957049 | KEGG | | isoprenoid biosynthetic process, | 0.021809802 | GO:0008299 | | Terpenoid_backbone_biosynthesis | 0.026711708 | KEGG | | large ribosomal subunit, | 0.033953688 | GO:0015934 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000005G1220 | zinc ion binding | AT3G54360 (8.00E-122) | | PH01000144G1250 | GHMP kinase family protein | AT3G54250 (7.00E-155) | | PH01000299G0460 | Ribosomal protein L1p/L10e family | AT1G08360 (1.60E-88) | | PH01000499G0720 | Polyketide cyclase/dehydrase and lipid transport superfamily protein | AT3G13062 (7.80E-43) | | PH01000583G0630 | nicotinate phosphoribosyltransferase 2 | AT2G23420 (0.00E+00) | | PH01001720G0330 | NAD(P)-binding Rossmann-fold superfamily protein | AT2G05990 (2.60E-69) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000496 | cullin-RING ubiquitin ligase complex,
ubiquitin protein ligase binding,
Pseudo ARR-B Transcription_Regulator(from iTAK)
ubiquitin-dependent protein catabolic process,
diphosphomevalonate decarboxylase activity,
L,L-diaminopimelate_aminotransferase_activity
Citrate_cycle_(TCA_cycle)
Pyruvate_metabolism
| details | | CFinderM000801 | arsenite_transport
arsenite transmembrane transporter activity,
galactose metabolic process,
G2-like Transcription_Regulator(from PlantTFDB)
GARP-G2-like Transcription_Regulator(from iTAK)
UDP-glucose 4-epimerase activity,
| details | | CFinderM000991 | cation:chloride_symporter_activity
proteasome_regulatory_particle
Proteasome
microtubule binding,
cytokinesis
ion transport,
microtubule cytoskeleton organization,
| details | | CFinderM001275 | HB-other Transcription_Regulator(from PlantTFDB)
mRNA_surveillance_pathway
| details | | CFinderM001397 | GT4 GlycosylTransferases
| details | | CFinderM001494 | GRAS Transcription_Regulator(from PlantTFDB)
protein catabolic process,
| details | | CFinderM001524 | diphosphomevalonate decarboxylase activity,
Peroxisome
6-phosphofructokinase complex,
Terpenoid_backbone_biosynthesis
RWP-RK Transcription_Regulator(from iTAK)
Nin-like Transcription_Regulator(from PlantTFDB)
6-phosphofructokinase activity,
GRAS Transcription_Regulator(from PlantTFDB)
isoprenoid biosynthetic process,
glycolysis,
| details | | CFinderM001635 | Ribosome
translation,
Ribosome
intracellular,
C3H Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001721 | STE_STE11 (from iTAK)
outer membrane,
Endocytosis
| details | | CFinderM001823 | large ribosomal subunit,
| details | | CFinderM001840 | transcription factor TFIIF complex,
STE_STE11 (from iTAK)
diphosphomevalonate decarboxylase activity,
ATP binding,
histone deacetylase activity,
histone deacetylation,
transcription initiation from RNA polymerase II promoter,
Basal_transcription_factors
Terpenoid_backbone_biosynthesis
protein catabolic process,
isoprenoid biosynthetic process,
Endocytosis
| details |
4.Expression profilings |
