CFinderM000623's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
intracellular,2.69E-05GO:0005622
Ribosome7.41E-05KEGG
translation,0.000176502GO:0006412
structural constituent of ribosome,0.001954382GO:0003735
HB-other Transcription_Regulator(from PlantTFDB)0.007205901GFam

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000046G0140Homeodomain-like transcriptional regulatorAT5G44180 (0.00E+00)
PH01000288G0820S18 ribosomal proteinAT4G09800 (2.80E-55)
PH01000466G0100AAA-type ATPase family proteinAT1G02890 (0)
PH01000766G0350-AT1G03290 (1.00E-51)
PH01000947G0050Ribosomal protein L34e superfamily proteinAT1G26880 (1.10E-44)
PH01001542G0180suppressor of abi3-5AT3G54230 (0.00E+00)
PH01003750G0150ribosomal protein S11-betaAT5G23740 (8.10E-61)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000352Ribosome
translation,
Ribosome
intracellular,
structural constituent of ribosome,
translational initiation,
transcription, DNA-dependent,
RNA_polymerase
details
CFinderM000534CMGC_GSK (from iTAK)
transcription factor TFIID complex,
intracellular,
Basal_transcription_factors
Phagosome
details
CFinderM001024poly(A)+ mRNA export from nucleus,
nuclear pore,
details
CFinderM001173HB-other Transcription_Regulator(from PlantTFDB)
details
CFinderM001199proton-transporting two-sector ATPase complex, catalytic domain,
proton-transporting ATP synthase complex, catalytic core F(1),
CMGC_CDK-PITSLRE (from iTAK)
HB-other Transcription_Regulator(from PlantTFDB)
C3H Transcription_Regulator(from PlantTFDB)
tricarboxylic acid cycle,
ATP synthesis coupled proton transport,
ATP hydrolysis coupled proton transport,
Pyruvate_metabolism
Carbon_fixation_pathways_in_prokaryotes
Methane_metabolism
Carbon_fixation_in_photosynthetic_organisms
details
CFinderM001353TKL-Pl-7 (from iTAK)
Others Transcription_Regulator(from iTAK)
details
CFinderM001569Alanine,_aspartate_and_glutamate_metabolism
TAZ Transcription_Regulator(from iTAK)
Group-Pl-3 (from iTAK)
CMGC_CLK (from iTAK)
NF-YC Transcription_Regulator(from PlantTFDB)
HB-other Transcription_Regulator(from PlantTFDB)
arginine biosynthetic process,
'de novo' IMP biosynthetic process,
eukaryotic translation elongation factor 1 complex,
argininosuccinate synthase activity,
phosphoribosylformylglycinamidine cyclo-ligase activity,
details
CFinderM001594Steroid_biosynthesis
cholestenol delta-isomerase activity,
sterol metabolic process,
details
CFinderM001812intracellular transport,
5'-3' exoribonuclease activity,
nucleobase-containing compound metabolic process,
exonuclease activity,
Ribosome_biogenesis_in_eukaryotes
RNA_degradation
details
CFinderM001816transcription factor TFIIF complex,
Basal_transcription_factors
transcription initiation from RNA polymerase II promoter,
protein catabolic process,
details

4.Expression profilings