1.Module annotation (GSEA enrichment result) Function Annotation | FDR | Gene Ontolog | ion transport, | 0.012729693 | GO:0006811 | Ubiquitin_mediated_proteolysis | 0.033507295 | KEGG | membrane, | 0.038248123 | GO:0016020 |
2.Module member annotation Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | PH01000154G1380 | Protein of unknown function (DUF3527) | AT5G59020 (7.80E-37) | PH01000274G0530 | ubiquiting-conjugating enzyme 2 | AT2G02760 (2.50E-82) | PH01000625G0460 | - | - (-) | PH01000736G0120 | Regulator of chromosome condensation (RCC1) family protein | AT3G15430 (2.00E-152) | PH01001115G0490 | Protein of unknown function (DUF3527) | AT2G29510 (4.60E-42) | PH01002317G0040 | ABC-2 type transporter family protein | AT2G28070 (0.00E+00) | PH01003486G0160 | potassium channel in Arabidopsis thaliana 2 | AT4G18290 (4.00E-168) | PH01004926G0040 | Tetratricopeptide repeat (TPR)-like superfamily protein | AT3G15200 (6.20E-39) |
3.Direct connection functional modules Module ID | Function Annotation | Overlap condition | CFinderM000031 | | details | CFinderM000377 | ARR-B Transcription_Regulator(from PlantTFDB)
| details | CFinderM000473 | | details | CFinderM000671 | SET Transcription_Regulator(from iTAK) DNA repair, Base_excision_repair nuclease activity, Ubiquitin_mediated_proteolysis
| details | CFinderM000846 | TALE Transcription_Regulator(from PlantTFDB) HB-other Transcription_Regulator(from PlantTFDB) Peroxisome
| details | CFinderM000954 | defense response, ADP_binding acid phosphatase activity, Ubiquitin_mediated_proteolysis acid-amino acid ligase activity,
| details | CFinderM001120 | Valine,_leucine_and_isoleucine_biosynthesis Glycine,_serine_and_threonine_metabolism isoleucine biosynthetic process, L-threonine ammonia-lyase activity, cellular amino acid metabolic process,
| details | CFinderM001301 | TALE Transcription_Regulator(from PlantTFDB) SBP Transcription_Regulator(from PlantTFDB) HB-other Transcription_Regulator(from PlantTFDB) glycogen biosynthetic process, regulation of actin filament polymerization, cytoskeleton,
| details | CFinderM001492 | mitochondrial inner membrane, mitochondrial inner membrane presequence translocase complex, nucleolus, Ubiquitin_mediated_proteolysis ribosome biogenesis,
| details | CFinderM001633 | TALE Transcription_Regulator(from PlantTFDB) HB-other Transcription_Regulator(from PlantTFDB) Peroxisome
| details | CFinderM001839 | GPI anchor metabolic process, DNA methylation, DNA recombination, Base_excision_repair Ubiquitin_mediated_proteolysis
| details | CFinderM001869 | DNA recombination, (1->3)-beta-D-glucan biosynthetic process, 1,3-beta-D-glucan synthase complex, Ubiquitin_mediated_proteolysis
| details | CFinderM001880 | RNA_transport C2H2 Transcription_Regulator(from PlantTFDB) RLK-Pelle_RLCK-VIIa-2 (from iTAK)
| details |
4.Expression profilings |