|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | CMGC_CDK-CRK7-CDK9 (from iTAK) | 0.002435748 | GFam |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000461G0530 | RING/U-box superfamily protein | AT2G20650 (1.60E-96) | | PH01000658G0120 | RING/U-box superfamily protein | AT4G28370 (2.00E-133) | | PH01001484G0450 | Ribosomal protein L4/L1 family | AT2G20060 (9.00E-102) | | PH01001710G0310 | NOP56-like pre RNA processing ribonucleoprotein | AT3G05060 (8.00E-140) | | PH01001852G0170 | CTC-interacting domain 7 | AT2G26280 (2.20E-62) | | PH01002620G0190 | respiratory burst oxidase protein F | AT1G64060 (0) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000319 | nucleoside_diphosphate_phosphorylation
carbohydrate phosphorylation,
histone_H4_acetylation
UTP biosynthetic process,
CTP biosynthetic process,
histone_H2A_acetylation
GTP biosynthetic process,
aromatic amino acid family metabolic process,
chromatin remodeling,
| details | | CFinderM000347 | Pantothenate_and_CoA_biosynthesis
Valine,_leucine_and_isoleucine_degradation
CMGC_CDK-CRK7-CDK9 (from iTAK)
pantothenate kinase activity,
coenzyme A biosynthetic process,
Propanoate_metabolism
beta-Alanine_metabolism
| details | | CFinderM000474 | CAMK_CAMKL-CHK1 (from iTAK)
eukaryotic translation initiation factor 3 complex,
| details | | CFinderM000526 | Phenylpropanoid_biosynthesis
Phenylalanine_metabolism
Stilbenoid,_diarylheptanoid_and_gingerol_biosynthesis
cellular metabolic process,
coenzyme binding,
Flavonoid_biosynthesis
Ubiquinone_and_other_terpenoid-quinone_biosynthesis
| details | | CFinderM000589 | TKL-Pl-1 (from iTAK)
TKL-Pl-6 (from iTAK)
Fructose_and_mannose_metabolism
6-phosphofructokinase complex,
diphosphate-fructose-6-phosphate 1-phosphotransferase activity,
cysteine-type endopeptidase activity,
6-phosphofructokinase activity,
protein kinase activity,
ATP binding,
transferase activity, transferring phosphorus-containing groups,
protein phosphorylation,
fructose_6-phosphate_metabolic_process
RLK-Pelle_RLCK-VIIa-2 (from iTAK)
| details | | CFinderM000606 | histone_H2A_acetylation
CTP biosynthetic process,
histone_H4_acetylation
protein neddylation,
nucleoside_diphosphate_phosphorylation
UTP biosynthetic process,
GTP biosynthetic process,
carbohydrate phosphorylation,
chromatin remodeling,
| details | | CFinderM000724 | HSF Transcription_Regulator(from PlantTFDB)
metabolic process,
sterol_24-C-methyltransferase_activity
Steroid_biosynthesis
protein kinase C-activating G-protein coupled receptor signaling pathway,
steroid biosynthetic process,
diacylglycerol kinase activity,
NAD+ kinase activity,
| details | | CFinderM000790 | RLK-Pelle_LRR-VIII-1 (from iTAK)
CMGC_CDK-CRK7-CDK9 (from iTAK)
GARP-G2-like Transcription_Regulator(from iTAK)
G2-like Transcription_Regulator(from PlantTFDB)
| details | | CFinderM000925 | Ribosome
translation,
fructose_6-phosphate_metabolic_process
Fructose_and_mannose_metabolism
GARP-G2-like Transcription_Regulator(from iTAK)
G2-like Transcription_Regulator(from PlantTFDB)
diphosphate-fructose-6-phosphate 1-phosphotransferase activity,
structural constituent of ribosome,
large ribosomal subunit,
6-phosphofructokinase complex,
6-phosphofructokinase activity,
| details | | CFinderM000966 | TKL-Pl-1 (from iTAK)
CMGC_CDK-CRK7-CDK9 (from iTAK)
protein phosphorylation,
chloride transport,
CAMK_CAMKL-CHK1 (from iTAK)
transferase activity, transferring phosphorus-containing groups,
voltage-gated chloride channel activity,
protein kinase activity,
ion channel activity,
ATP binding,
| details | | CFinderM000967 | TKL-Pl-1 (from iTAK)
GH17 Glycoside_Hydrolases
phosphate-containing compound metabolic process,
phospholipid transport,
magnesium ion binding,
| details | | CFinderM000974 | CMGC_CDKL-Os (from iTAK)
CAMTA Transcription_Regulator(from PlantTFDB)
CMGC_CDK-CRK7-CDK9 (from iTAK)
Glycerolipid_metabolism
| details | | CFinderM001156 | single-stranded DNA binding,
DNA_replication
| details | | CFinderM001197 | Ribosome
translation,
G2-like Transcription_Regulator(from PlantTFDB)
GARP-G2-like Transcription_Regulator(from iTAK)
L-ascorbic acid binding,
structural constituent of ribosome,
Arginine_and_proline_metabolism
| details | | CFinderM001212 | SCY1_SCYL2 (from iTAK)
Ribosome
translation,
structural constituent of ribosome,
| details | | CFinderM001250 | Endocytosis
cysteine-type endopeptidase activity,
| details | | CFinderM001273 | | details | | CFinderM001469 | FAR1 Transcription_Regulator(from PlantTFDB)
CMGC_CDK-CRK7-CDK9 (from iTAK)
RNA_degradation
membrane,
| details | | CFinderM001693 | translation,
Ribosome
structural constituent of ribosome,
intracellular,
| details | | CFinderM001709 | GH17 Glycoside_Hydrolases
Arginine_and_proline_metabolism
| details | | CFinderM001753 | Endocytosis
HSF Transcription_Regulator(from PlantTFDB)
single-stranded DNA binding,
| details | | CFinderM001852 | calcium-dependent phospholipid binding,
single-stranded DNA binding,
DNA_replication
| details |
4.Expression profilings |
