CFinderM000911's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
intracellular,0.001365278GO:0005622
Ribosome0.001598263KEGG
translation,0.006692557GO:0006412
PHD Transcription_Regulator(from iTAK)0.01773157GFam
structural constituent of ribosome,0.018821901GO:0003735
protein import into nucleus,0.026833158GO:0006606

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000020G0530-- (-)
PH01000102G0440ubiquitin-protein ligase 1AT1G55860 (0)
PH01000145G0060cycloartenol synthase 1AT2G07050 (2.70E-91)
PH01000159G1140-AT3G50370 (1.40E-65)
PH01000383G0550Ribosomal protein L34e superfamily proteinAT1G26880 (1.20E-43)
PH01000421G0730Ribosomal L29e protein familyAT3G06700 (2.70E-23)
PH01000553G0500chromatin remodeling 4AT5G44800 (0.00E+00)
PH01000925G0160-- (-)
PH01000974G0600Ribosomal protein L36e family proteinAT5G02450 (1.80E-43)
PH01000982G0620chromatin remodeling 4AT5G44800 (1.60E-68)
PH01001340G0420RNA binding (RRM/RBD/RNP motifs) family proteinAT3G45630 (6.00E-135)
PH01002680G01601-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinasesAT4G33240 (0.00E+00)
PH01003645G0070Transcription elongation factor (TFIIS) family proteinAT4G24200 (2.50E-51)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000068cellular protein modification process,
ubiquitin-protein ligase activity,
Ubiquitin_mediated_proteolysis
binding,
intracellular,
protein binding,
CE8 Carbohydrate_Esterases
GH28 Glycoside_Hydrolases
Alfin-like Transcription_Regulator(from iTAK)
SWI/SNF-SWI3 Transcription_Regulator(from iTAK)
TORC1_complex
details
CFinderM000107diaminopimelate epimerase activity,
pyrroline-5-carboxylate reductase activity,
translation,
proline biosynthetic process,
lysine biosynthetic process via diaminopimelate,
eukaryotic translation elongation factor 1 complex,
translational elongation,
cellular protein modification process,
Lysine_biosynthesis
intracellular,
translation elongation factor activity,
details
CFinderM000146cellular protein modification process,
intracellular,
Ubiquitin_mediated_proteolysis
details
CFinderM000238Inositol_phosphate_metabolism
Phosphatidylinositol_signaling_system
Phagosome
Ribosome_biogenesis_in_eukaryotes
details
CFinderM000239cullin-RING ubiquitin ligase complex,
glycogen_phosphorylase_activity
protein_binding,_bridging
actin filament binding,
phosphatidylserine biosynthetic process,
details
CFinderM000284cellular protein modification process,
Ubiquitin_mediated_proteolysis
intracellular,
ubiquitin-protein ligase activity,
binding,
details
CFinderM000353intracellular,
cellular protein modification process,
Ubiquitin_mediated_proteolysis
Ribosome
ubiquitin-protein ligase activity,
Ribosome
translation,
methylation,
translational initiation,
nucleobase-containing compound metabolic process,
RNA_polymerase
structural constituent of ribosome,
transcription, DNA-dependent,
details
CFinderM000687Ubiquitin_mediated_proteolysis
GH35 Glycoside_Hydrolases

cullin-RING ubiquitin ligase complex,
Nucleotide_excision_repair
metallocarboxypeptidase activity,
details
CFinderM000769cellular protein modification process,
Ubiquitin_mediated_proteolysis
ubiquitin-protein ligase activity,
intracellular,
binding,
carbon-sulfur lyase activity,
details
CFinderM000817riboflavin synthase complex,
ubiquitin protein ligase binding,
cullin-RING ubiquitin ligase complex,
Riboflavin_metabolism
riboflavin biosynthetic process,
cellular amino acid biosynthetic process,
Nucleotide_excision_repair
details
CFinderM000912intracellular,
SWI/SNF-SWI3 Transcription_Regulator(from iTAK)
Ribosome
translation,
cellular protein modification process,
structural constituent of ribosome,
Ubiquitin_mediated_proteolysis
details
CFinderM000913Ribosome
translation,
Ribosome
intracellular,
cullin-RING ubiquitin ligase complex,
structural constituent of ribosome,
ubiquitin protein ligase binding,
MYB_related Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)
ubiquitin-dependent protein catabolic process,
Ubiquitin_mediated_proteolysis
details
CFinderM000960Ubiquitin_mediated_proteolysis
anaphase-promoting complex,
cullin-RING ubiquitin ligase complex,
details
CFinderM000973STE_STE11 (from iTAK)
protein import into nucleus,
RNA_degradation
phospholipid transport,
details
CFinderM001213Lipoic_acid_metabolism
RLK-Pelle_CrRLK1L-1 (from iTAK)
TKL-Pl-6 (from iTAK)
lipoate biosynthetic process,
chloroplast,
details
CFinderM001279cullin-RING ubiquitin ligase complex,
ubiquitin protein ligase binding,
Nucleotide_excision_repair
Ubiquitin_mediated_proteolysis
details
CFinderM001281phospholipid transport,
phosphatidylinositol metabolic process,
Inositol_phosphate_metabolism
Phosphatidylinositol_signaling_system
cellular protein metabolic process,
Phagosome
details
CFinderM001597Phosphatidylinositol_signaling_system
Inositol_phosphate_metabolism
phosphatidylinositol metabolic process,
phosphatidylinositol phosphate kinase activity,
Phagosome
cellular protein metabolic process,
C3H Transcription_Regulator(from PlantTFDB)
membrane,
details
CFinderM001656GH43 Glycoside_Hydrolases
TKL-Pl-6 (from iTAK)
GH35 Glycoside_Hydrolases
Inositol_phosphate_metabolism
Phosphatidylinositol_signaling_system
details
CFinderM001657Inositol_phosphate_metabolism
Phosphatidylinositol_signaling_system
phosphatidylinositol metabolic process,
Phagosome
cellular protein metabolic process,
phosphatidylinositol phosphate kinase activity,
aspartic-type endopeptidase activity,
GH35 Glycoside_Hydrolases
phospholipid transport,
proteolysis,
metal ion binding,
details
CFinderM001658Phosphatidylinositol_signaling_system
Inositol_phosphate_metabolism
phosphatidylinositol metabolic process,
phosphatidylinositol phosphate kinase activity,
Phagosome
cellular protein metabolic process,
TKL-Pl-6 (from iTAK)
details
CFinderM001801GH17 Glycoside_Hydrolases
phospholipid transport,
phosphatidylinositol metabolic process,
Inositol_phosphate_metabolism
Phosphatidylinositol_signaling_system
RNA_degradation
Arginine_and_proline_metabolism
Phagosome
details
CFinderM001828ARID Transcription_Regulator(from iTAK)
ion transport,
intracellular,
details

4.Expression profilings


Show details about module gene expression profiling