CFinderM000912's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
intracellular,0.000674274GO:0005622
SWI/SNF-SWI3 Transcription_Regulator(from iTAK)0.001124807GFam
Ribosome0.002802861KEGG
translation,0.011541158GO:0006412
cellular protein modification process,0.020054139GO:0006464
structural constituent of ribosome,0.030846369GO:0003735
Ubiquitin_mediated_proteolysis0.037857009KEGG

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000059G0350LSD1-like 3AT4G16310 (0.00E+00)
PH01000287G0640RNA polymerase II transcription mediatorsAT4G00450 (0.00E+00)
PH01000383G0550Ribosomal protein L34e superfamily proteinAT1G26880 (1.20E-43)
PH01000421G0730Ribosomal L29e protein familyAT3G06700 (2.70E-23)
PH01000982G0620chromatin remodeling 4AT5G44800 (1.60E-68)
PH01004867G0080ubiquitin-protein ligase 1AT1G55860 (0)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000068cellular protein modification process,
ubiquitin-protein ligase activity,
Ubiquitin_mediated_proteolysis
binding,
intracellular,
protein binding,
CE8 Carbohydrate_Esterases
GH28 Glycoside_Hydrolases
Alfin-like Transcription_Regulator(from iTAK)
SWI/SNF-SWI3 Transcription_Regulator(from iTAK)
TORC1_complex
details
CFinderM000284cellular protein modification process,
Ubiquitin_mediated_proteolysis
intracellular,
ubiquitin-protein ligase activity,
binding,
details
CFinderM000353intracellular,
cellular protein modification process,
Ubiquitin_mediated_proteolysis
Ribosome
ubiquitin-protein ligase activity,
Ribosome
translation,
methylation,
translational initiation,
nucleobase-containing compound metabolic process,
RNA_polymerase
structural constituent of ribosome,
transcription, DNA-dependent,
details
CFinderM000545binding,
SNF2 Transcription_Regulator(from iTAK)
helicase activity,
ubiquitin-protein ligase activity,
cellular protein modification process,
TOR_signaling
nucleic acid binding,
TORC1_complex
DNA binding,
hydrolase_activity,_acting_on_acid_anhydrides
RNA metabolic process,
RNA_transport
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay,
Ubiquitin_mediated_proteolysis
nucleotide binding,
RNA binding,
ATP binding,
protein binding,
details
CFinderM000769cellular protein modification process,
Ubiquitin_mediated_proteolysis
ubiquitin-protein ligase activity,
intracellular,
binding,
carbon-sulfur lyase activity,
details
CFinderM000911intracellular,
Ribosome
translation,
PHD Transcription_Regulator(from iTAK)
structural constituent of ribosome,
protein import into nucleus,
details
CFinderM000913Ribosome
translation,
Ribosome
intracellular,
cullin-RING ubiquitin ligase complex,
structural constituent of ribosome,
ubiquitin protein ligase binding,
MYB_related Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)
ubiquitin-dependent protein catabolic process,
Ubiquitin_mediated_proteolysis
details
CFinderM000960Ubiquitin_mediated_proteolysis
anaphase-promoting complex,
cullin-RING ubiquitin ligase complex,
details
CFinderM000973STE_STE11 (from iTAK)
protein import into nucleus,
RNA_degradation
phospholipid transport,
details
CFinderM001147SWI/SNF-SWI3 Transcription_Regulator(from iTAK)
Alfin-like Transcription_Regulator(from iTAK)
nucleotidyltransferase activity,
TORC1_complex
mediator complex,
phospholipid metabolic process,
TOR_signaling
phospholipase A2 activity,
lipid catabolic process,
methylation,
Linoleic_acid_metabolism
Arachidonic_acid_metabolism
Ether_lipid_metabolism
alpha-Linolenic_acid_metabolism
details
CFinderM001175SWI/SNF-SWI3 Transcription_Regulator(from iTAK)
details
CFinderM001221cellular protein modification process,
phospholipid metabolic process,
Alfin-like Transcription_Regulator(from iTAK)
ubiquitin-protein ligase activity,
Ubiquitin_mediated_proteolysis
lipid catabolic process,
phospholipase A2 activity,
zinc ion binding,
intracellular,
protein binding,
binding,
Arachidonic_acid_metabolism
Linoleic_acid_metabolism
Ether_lipid_metabolism
alpha-Linolenic_acid_metabolism
Glycerophospholipid_metabolism
details
CFinderM001520SWI/SNF-SWI3 Transcription_Regulator(from iTAK)
Glycine,_serine_and_threonine_metabolism
L-serine biosynthetic process,
RNA metabolic process,
Methane_metabolism
phosphoglycerate dehydrogenase activity,
glycopeptide_alpha-N-acetylgalactosaminidase_activity
details

4.Expression profilings