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1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | tetrapyrrole biosynthetic process, | 0.005902928 | GO:0033014 | | glutamate-1-semialdehyde 2,1-aminomutase activity, | 0.01426875 | GO:0042286 | | ubiquitin-dependent protein catabolic process, | 0.044072282 | GO:0006511 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000020G0500 | translocon at the inner envelope membrane of chloroplasts 20 | AT1G04940 (3.40E-48) | | PH01000064G1200 | SAP domain-containing protein | AT4G39680 (6.50E-83) | | PH01000117G1260 | glutamate-1-semialdehyde-2,1-aminomutase | AT5G63570 (0.00E+00) | | PH01000129G0040 | ubiquitin-specific protease 26 | AT3G49600 (0.00E+00) | | PH01001710G0260 | NAD(P)-binding Rossmann-fold superfamily protein | AT5G18660 (1.00E-111) | | PH01002495G0210 | 31-kDa RNA binding protein | AT4G24770 (2.60E-58) | | PH01002650G0290 | alpha/beta-Hydrolases superfamily protein | AT1G35420 (3.10E-84) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000084 | cell wall macromolecule catabolic process,
chitin catabolic process,
WRKY Transcription_Regulator(from PlantTFDB)
defense response to fungus,
ammonium_transport
ammonium_transmembrane_transport
defense response to bacterium,
metabolic process,
chitinase activity,
| details | | CFinderM000188 | ubiquitin-dependent protein catabolic process,
| details | | CFinderM000509 | Whirly Transcription_Regulator(from PlantTFDB)
protochlorophyllide reductase activity,
Photosynthesis
Porphyrin_and_chlorophyll_metabolism
photosystem II,
oxygen evolving complex,
RNA_degradation
| details | | CFinderM000510 | Porphyrin_and_chlorophyll_metabolism
protochlorophyllide reductase activity,
glutamate-1-semialdehyde 2,1-aminomutase activity,
tetrapyrrole biosynthetic process,
sodium ion transport,
RNA_degradation
| details | | CFinderM000845 | iron-sulfur cluster assembly,
| details | | CFinderM001107 | clathrin coat of trans-Golgi network vesicle,
clathrin coat of coated pit,
structural molecule activity,
vesicle-mediated transport,
mitochondrial_respiratory_chain_complex_III
intracellular protein transport,
mitochondrial electron transport, ubiquinol to cytochrome c,
negative regulation of catalytic activity,
identical protein binding,
| details | | CFinderM001342 | | details | | CFinderM001449 | WNK_NRBP (from iTAK)
CAMK_CAMKL-CHK1 (from iTAK)
| details | | CFinderM001527 | PHD Transcription_Regulator(from iTAK)
guanyl-nucleotide exchange factor activity,
| details | | CFinderM001575 | protein methylation,
ubiquitin thiolesterase activity,
ubiquitin-dependent protein catabolic process,
methyltransferase activity,
| details | | CFinderM001590 | protein processing,
peroxiredoxin activity,
antioxidant activity,
integral to membrane,
Biosynthesis_of_unsaturated_fatty_acids
Fatty_acid_elongation
oxidoreductase activity, acting on the CH-CH group of donors,
double-stranded RNA binding,
ribonuclease III activity,
| details | | CFinderM001670 | isoprenoid biosynthetic process,
| details | | CFinderM001676 | Spliceosome
| details | | CFinderM001815 | | details | | CFinderM001838 | ubiquitin-dependent protein catabolic process,
ubiquitin thiolesterase activity,
| details | | CFinderM001876 | Spliceosome
| details |
4.Expression profilings |
