|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | Protein_processing_in_endoplasmic_reticulum | 0.046946751 | KEGG |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000311G0400 | - | AT3G17740 (7.00E-180) | | PH01000441G0690 | D111/G-patch domain-containing protein | AT4G34140 (1.00E-56) | | PH01001269G0020 | Ras-related small GTP-binding family protein | AT3G62560 (6.00E-90) | | PH01001373G0260 | RING/FYVE/PHD zinc finger superfamily protein | AT1G32810 (2.40E-21) | | PH01003018G0160 | Tetratricopeptide repeat (TPR)-like superfamily protein | AT3G11540 (0.00E+00) | | PH01003114G0070 | Zinc finger C-x8-C-x5-C-x3-H type family protein | AT1G10320 (9.80E-96) | | PH01003792G0020 | Pentatricopeptide repeat (PPR) superfamily protein | AT2G26790 (2.00E-102) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000944 | TKL-Pl-6 (from iTAK)
Ubiquitin_mediated_proteolysis
| details | | CFinderM000970 | Protein_processing_in_endoplasmic_reticulum
C3H Transcription_Regulator(from PlantTFDB)
RNA_transport
| details | | CFinderM001291 | ubiquitin-dependent protein catabolic process,
| details | | CFinderM001338 | GT41 GlycosylTransferases
positive regulation of translational elongation,
positive regulation of translational termination,
translational frameshifting,
peptidyl-lysine modification to hypusine,
RNA_degradation
protein binding,
ribosome binding,
translation elongation factor activity,
| details | | CFinderM001457 | mRNA_surveillance_pathway
Diterpenoid_biosynthesis
CAMTA Transcription_Regulator(from PlantTFDB)
protein binding,
mechanically-gated_ion_channel_activity
| details | | CFinderM001525 | MYB-related Transcription_Regulator(from iTAK)
| details | | CFinderM001602 | SWI/SNF-BAF60b Transcription_Regulator(from iTAK)
histone modification,
C3H Transcription_Regulator(from PlantTFDB)
mRNA_surveillance_pathway
transcription initiation, DNA-dependent,
| details | | CFinderM001741 | protein folding,
Nucleotide_excision_repair
mRNA_surveillance_pathway
Ubiquitin_mediated_proteolysis
peptidyl-prolyl cis-trans isomerase activity,
nucleic acid binding,
| details | | CFinderM001776 | Protein_processing_in_endoplasmic_reticulum
U4/U6_x_U5_tri-snRNP_complex
intracellular protein transport,
GTP binding,
intracellular,
nuclear mRNA splicing, via spliceosome,
small GTPase mediated signal transduction,
| details | | CFinderM001785 | transferase activity, transferring pentosyl groups,
Nicotinate_and_nicotinamide_metabolism
Diterpenoid_biosynthesis
| details | | CFinderM001819 | SNF2 Transcription_Regulator(from iTAK)
cis-Golgi network,
mRNA_surveillance_pathway
| details |
4.Expression profilings |
