CFinderM000995's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
nucleus,0.007953898GO:0005634
riboflavin kinase activity,0.012231121GO:0008531
RLK-Pelle_LRR-II (from iTAK)0.012343902GFam
B3-ARF Transcription_Regulator(from iTAK)0.012343902GFam
ARF Transcription_Regulator(from PlantTFDB)0.012343902GFam
Riboflavin_metabolism0.027808125KEGG
DNA_replication0.034619216KEGG
Mismatch_repair0.034619216KEGG
Nucleotide_excision_repair0.034619216KEGG
riboflavin biosynthetic process,0.036353106GO:0009231
response to hormone stimulus,0.049072294GO:0009725

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000014G1010CTC-interacting domain 7AT2G26280 (2.00E-104)
PH01000237G0420Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-relatedAT2G33860 (1.20E-65)
PH01000560G0260riboflavin kinase/FMN hydrolaseAT4G21470 (2.00E-91)
PH01000569G0160NSP-interacting kinase 1AT5G16000 (0.00E+00)
PH01003357G0110replication factor C subunit 3AT1G77470 (1.00E-120)
PH01004043G0030G10 family proteinAT4G21110 (2.90E-73)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000691ornithine carbamoyltransferase activity,
phosphoribosyl-AMP cyclohydrolase activity,
ornithine_metabolic_process
carboxyl- or carbamoyltransferase activity,
histone deacetylase activity,
histone deacetylation,
Histidine_metabolism
histidine biosynthetic process,
Arginine_and_proline_metabolism
cellular amino acid metabolic process,
cellular protein metabolic process,
amino acid binding,
details
CFinderM000787TKL-Pl-3 (from iTAK)
RLK-Pelle_LRR-II (from iTAK)
RNA-directed RNA polymerase activity,
protein phosphorylation,
details
CFinderM001166DNA_replication
Nucleotide_excision_repair
Mismatch_repair
Riboflavin_metabolism
histone acetylation,
chromatin modification,
chromatin silencing at telomere,
details
CFinderM001206Riboflavin_metabolism
riboflavin kinase activity,
riboflavin biosynthetic process,
bZIP Transcription_Regulator(from PlantTFDB)
nucleosome assembly,
details
CFinderM001502SET Transcription_Regulator(from iTAK)
ribonucleoprotein complex,
nucleus,
histone_lysine_methylation
RNA processing,
details
CFinderM001583endoplasmic reticulum,
bZIP Transcription_Regulator(from PlantTFDB)
details
CFinderM001584details
CFinderM001718phosphoribosyl-AMP cyclohydrolase activity,
histidine biosynthetic process,
RNA modification,
pseudouridine synthesis,
nuclear pore,
details
CFinderM001758nuclear pore,
MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
details
CFinderM001831details
CFinderM001848Valine,_leucine_and_isoleucine_biosynthesis
C5-Branched_dibasic_acid_metabolism
SBP Transcription_Regulator(from PlantTFDB)
Pantothenate_and_CoA_biosynthesis
Butanoate_metabolism
branched chain family amino acid biosynthetic process,
acetolactate synthase activity,
details
CFinderM001875histone deacetylation,
histone deacetylase activity,
DNA_replication
Mismatch_repair
Nucleotide_excision_repair
DNA_replication
details
CFinderM001882Valine,_leucine_and_isoleucine_biosynthesis
C5-Branched_dibasic_acid_metabolism
branched chain family amino acid biosynthetic process,
SBP Transcription_Regulator(from PlantTFDB)
Butanoate_metabolism
Pantothenate_and_CoA_biosynthesis
acetolactate synthase activity,
details

4.Expression profilings