|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | Endocytosis | 0.018055548 | KEGG | | STE_STE11 (from iTAK) | 0.03600586 | GFam |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000011G0550 | Protein of unknown function (DUF630 and DUF632) | AT5G25590 (2.00E-111) | | PH01000334G0560 | Protein of unknown function (DUF630 and DUF632) | AT5G25590 (2.00E-158) | | PH01000335G0770 | vacuolar protein sorting-associated protein 2.3 | AT1G03950 (3.40E-64) | | PH01001286G0020 | NPK1-related protein kinase 3 | AT3G06030 (1.90E-73) | | PH01002508G0050 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | AT1G68920 (8.60E-61) | | PH01002627G0160 | - | - (-) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000363 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
aromatic amino acid family biosynthetic process,
3-dehydroquinate synthase activity,
ribonucleoside_binding
transcription, DNA-dependent,
DNA-directed RNA polymerase activity,
| details | | CFinderM000527 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
3-dehydroquinate synthase activity,
regulation_of_cell_cycle
aromatic amino acid family biosynthetic process,
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
protein_kinase_binding
| details | | CFinderM000788 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
3-dehydroquinate synthase activity,
B3-ARF Transcription_Regulator(from iTAK)
ARF Transcription_Regulator(from PlantTFDB)
cytoplasm,
protein complex,
aromatic amino acid family biosynthetic process,
response to hormone stimulus,
protein polymerization,
Plant_hormone_signal_transduction
| details | | CFinderM001000 | microtubule cytoskeleton organization,
cytokinesis
GTnc GlycosylTransferases
RLK-Pelle_RLCK-V (from iTAK)
RLK-Pelle_LRR-V (from iTAK)
| details | | CFinderM001001 | MCM_complex
proteasomal ubiquitin-dependent protein catabolic process,
DNA-dependent DNA replication initiation,
nucleotide-excision repair,
nucleus,
STE_STE11 (from iTAK)
GTnc GlycosylTransferases
Nucleotide_excision_repair
DNA_replication
| details | | CFinderM001002 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
aromatic amino acid family biosynthetic process,
cytokinesis
microtubule cytoskeleton organization,
3-dehydroquinate synthase activity,
| details | | CFinderM001059 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
3-dehydroquinate synthase activity,
SNARE_interactions_in_vesicular_transport
Golgi vesicle transport,
aromatic amino acid family biosynthetic process,
phosphatidylinositol metabolic process,
RNA_degradation
| details | | CFinderM001205 | ribonucleoside_binding
transcription, DNA-dependent,
DNA-directed RNA polymerase activity,
Drug_metabolism_-_cytochrome_P450
Metabolism_of_xenobiotics_by_cytochrome_P450
Glutathione_metabolism
| details | | CFinderM001720 | RNA_polymerase_II_transcription_cofactor_activity
NAD+ ADP-ribosyltransferase activity,
mediator complex,
nuclear pore,
regulation of transcription from RNA polymerase II promoter,
protein transport,
| details |
4.Expression profilings |
