CFinderM001019's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
protein transport,0.046281138GO:0015031

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000004G3200-- (-)
PH01000014G1340FRIGIDA interacting protein 1AT2G06005 (1.60E-83)
PH01000047G2000-- (-)
PH01000087G0050RING/U-box superfamily proteinAT3G47160 (1.30E-86)
PH01000474G0310-AT1G03250 (6.00E-70)
PH01001604G0380RING/U-box superfamily proteinAT3G53410 (8.40E-67)
PH01002151G0040Chaperone DnaJ-domain superfamily proteinAT5G16650 (1.60E-44)
PH01003011G0140SNF7 family proteinAT2G06530 (3.40E-57)
PH01006670G0010P-loop containing nucleoside triphosphate hydrolases superfamily proteinAT1G33970 (1.00E-18)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000179Ribosome_biogenesis_in_eukaryotes
aspartyl-tRNA aminoacylation,
aspartate-tRNA ligase activity,
tRNA aminoacylation for protein translation,
details
CFinderM000297details
CFinderM000347Pantothenate_and_CoA_biosynthesis
Valine,_leucine_and_isoleucine_degradation
CMGC_CDK-CRK7-CDK9 (from iTAK)
pantothenate kinase activity,
coenzyme A biosynthetic process,
Propanoate_metabolism
beta-Alanine_metabolism
details
CFinderM000745GMP synthase (glutamine-hydrolyzing) activity,
pyrophosphatase_activity
CMGC_GSK (from iTAK)
protein-arginine_deiminase_activity
details
CFinderM000909Homologous_recombination
DNA_replication
Mismatch_repair
histone-lysine N-methyltransferase activity,
single-stranded DNA binding,
Golgi vesicle transport,
details
CFinderM001085details
CFinderM001086Pantothenate_and_CoA_biosynthesis
tRNA processing,
methyltransferase activity,
details
CFinderM001105Endocytosis
pseudouridine synthesis,
RNA modification,
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
protein_kinase_binding
pseudouridine synthase activity,
details
CFinderM001106Endocytosis
details
CFinderM001511nuclear pore,
nucleocytoplasmic transport,
RNA processing,
Ribosome_biogenesis_in_eukaryotes
RNA_transport
details
CFinderM001583endoplasmic reticulum,
bZIP Transcription_Regulator(from PlantTFDB)
details
CFinderM001719nuclear pore,
RNA modification,
pseudouridine synthesis,
pseudouridine synthase activity,
Ribosome_biogenesis_in_eukaryotes
RNA_transport
details
CFinderM001761large ribosomal subunit,
intracellular,
details
CFinderM001875histone deacetylation,
histone deacetylase activity,
DNA_replication
Mismatch_repair
Nucleotide_excision_repair
DNA_replication
details

4.Expression profilings


Show details about module gene expression profiling