CFinderM001027's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
RLK-Pelle_SD-2b (from iTAK)0.014905864GFam
Phenylalanine_metabolism0.048036399KEGG
Phenylpropanoid_biosynthesis0.048036399KEGG
Methane_metabolism0.048036399KEGG

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000032G2150metacaspase 4AT1G79340 (8.00E-132)
PH01000068G0630novel plant snare 13AT3G17440 (8.40E-78)
PH01000428G0560IQ-domain 2AT5G03040 (2.80E-81)
PH01000464G0140UDP-glucuronic acid decarboxylase 1AT3G53520 (1.10E-77)
PH01000549G0330early nodulin-like protein 20AT2G27035 (6.20E-20)
PH01002230G0270RNA binding;abscisic acid bindingAT4G16280 (5.10E-90)
PH01002411G0420S-domain-2 5AT4G32300 (9.00E-150)
PH01003153G0040Peroxidase superfamily proteinAT2G38380 (1.60E-96)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000013cellulose biosynthetic process,
cellulose synthase (UDP-forming) activity,
response to oxidative stress,
extracellular polysaccharide biosynthetic process,
hydrolase activity, hydrolyzing O-glycosyl compounds,
carbohydrate metabolic process,
details
CFinderM000372Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
L-phenylalanine biosynthetic process,
regulation of ARF GTPase activity,
Endocytosis
details
CFinderM000783carbohydrate metabolic process,
CE13 Carbohydrate_Esterases
hydrolase activity, hydrolyzing O-glycosyl compounds,
details
CFinderM000929LIM Transcription_Regulator(from iTAK)
RLK-Pelle_LRR-V (from iTAK)
Amino_sugar_and_nucleotide_sugar_metabolism
cellular carbohydrate metabolic process,
details
CFinderM000930LIM Transcription_Regulator(from iTAK)
RLK-Pelle_LRR-V (from iTAK)
details
CFinderM001032glycine cleavage complex,
LIM Transcription_Regulator(from iTAK)
glycine decarboxylation via glycine cleavage system,
glycine catabolic process,
actin cytoskeleton organization,
Glyoxylate_and_dicarboxylate_metabolism
details
CFinderM001073details
CFinderM001114MYB Transcription_Regulator(from PlantTFDB)
details
CFinderM001135details
CFinderM001136regulation of ARF protein signal transduction,
DNA integration,
ARF guanyl-nucleotide exchange factor activity,
details
CFinderM001154clathrin_coat
RLK-Pelle_LysM (from iTAK)
clathrin_coat_assembly
Trihelix Transcription_Regulator(from PlantTFDB)
cellular amino acid biosynthetic process,
RLK-Pelle_SD-2b (from iTAK)
clathrin_binding
1-phosphatidylinositol_binding
details
CFinderM001162clathrin_coat_assembly
clathrin_coat
RLK-Pelle_SD-2b (from iTAK)
details
CFinderM001196nitronate monooxygenase activity,
intramolecular transferase activity,
details
CFinderM001255GT77 GlycosylTransferases
Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
succinate-CoA ligase (ADP-forming) activity,
ATP citrate synthase activity,
Carbon_fixation_pathways_in_prokaryotes
transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer,
prephenate dehydratase activity,
Citrate_cycle_(TCA_cycle)
details
CFinderM0013445-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity,
methionine biosynthetic process,
Selenocompound_metabolism
cysteine-type endopeptidase activity,
cellular amino acid biosynthetic process,
Cysteine_and_methionine_metabolism
proton transport,
proteolysis,
hydrogen-translocating pyrophosphatase activity,
inorganic diphosphatase activity,
details
CFinderM001475cellulose biosynthetic process,
intramolecular transferase activity,
details
CFinderM001784RLK-Pelle_RLCK-V (from iTAK)
COPI vesicle coat,
membrane coat,
Spliceosome
details

4.Expression profilings