CFinderM001106's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
Endocytosis0.021032626KEGG

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000004G3200-- (-)
PH01000474G0310-AT1G03250 (6.00E-70)
PH01000678G0560Protein of unknown function (DUF1336)AT1G59650 (2.00E-134)
PH01001269G0070associated molecule with the SH3 domain of STAM 3AT4G16144 (2.00E-119)
PH01002151G0040Chaperone DnaJ-domain superfamily proteinAT5G16650 (1.60E-44)
PH01003037G0070RNI-like superfamily proteinAT3G07550 (6.80E-86)
PH01003326G0160fimbrin-like protein 2AT5G35700 (0)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000341exosome_(RNase_complex)
COP9_signalosome
details
CFinderM000745GMP synthase (glutamine-hydrolyzing) activity,
pyrophosphatase_activity
CMGC_GSK (from iTAK)
protein-arginine_deiminase_activity
details
CFinderM000909Homologous_recombination
DNA_replication
Mismatch_repair
histone-lysine N-methyltransferase activity,
single-stranded DNA binding,
Golgi vesicle transport,
details
CFinderM001019protein transport,
details
CFinderM001086Pantothenate_and_CoA_biosynthesis
tRNA processing,
methyltransferase activity,
details
CFinderM001105Endocytosis
pseudouridine synthesis,
RNA modification,
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
protein_kinase_binding
pseudouridine synthase activity,
details
CFinderM001149ketol-acid reductoisomerase activity,
branched chain family amino acid biosynthetic process,
cellular amino acid biosynthetic process,
SCY1_SCYL2 (from iTAK)
coenzyme binding,
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor,
Endocytosis
details
CFinderM001568FAR1 Transcription_Regulator(from PlantTFDB)
RLK-Pelle_LRR-XV (from iTAK)
details
CFinderM001583endoplasmic reticulum,
bZIP Transcription_Regulator(from PlantTFDB)
details
CFinderM001761large ribosomal subunit,
intracellular,
details
CFinderM001808protein binding,
Peroxisome
RNA_degradation
Endocytosis
details
CFinderM001832histone deacetylation,
Endocytosis
histone deacetylase activity,
cellular protein metabolic process,
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
NAD+ ADP-ribosyltransferase activity,
details
CFinderM001875histone deacetylation,
histone deacetylase activity,
DNA_replication
Mismatch_repair
Nucleotide_excision_repair
DNA_replication
details

4.Expression profilings