CFinderM001129's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
nucleus,0.007953898GO:0005634
double-strand break repair,0.010702121GO:0006302
DNA metabolic process,0.028846094GO:0006259
RNA_polymerase0.040108278KEGG
Pyrimidine_metabolism0.049296983KEGG
Purine_metabolism0.049296983KEGG

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000020G2590nuclear RNA polymerase C1AT5G60040 (1.30E-53)
PH01000312G0700Ubiquitin carboxyl-terminal hydrolase-related proteinAT3G47910 (0.00E+00)
PH01000666G0100nucleic acid binding;ATP-dependent helicases;ATP binding;helicases;ATP-dependent helicasesAT5G08110 (0.00E+00)
PH01000679G0200DNA repair and meiosis protein (Mre11)AT5G54260 (3.00E-179)
PH01002016G0170Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domainAT2G37520 (7.10E-68)
PH01002541G0130FK506 BINDING PROTEIN 53AT4G25340 (1.30E-19)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000387double-strand break repair,
DNA metabolic process,
endoplasmic reticulum,
details
CFinderM001366sulfur compound metabolic process,
endoplasmic reticulum,
phosphatidylinositol phosphorylation,
3'(2'),5'-bisphosphate nucleotidase activity,
RLK-Pelle_DLSV (from iTAK)
Phosphatidylinositol_signaling_system
Inositol_phosphate_metabolism
Sulfur_metabolism
details
CFinderM001473GPI anchor metabolic process,
DNA recombination,
RNA_degradation
details
CFinderM001492mitochondrial inner membrane,
mitochondrial inner membrane presequence translocase complex,
nucleolus,
Ubiquitin_mediated_proteolysis
ribosome biogenesis,
details
CFinderM001636GPI anchor metabolic process,
double-strand break repair,
protein folding,
nucleus,
DNA metabolic process,
exonuclease activity,
endonuclease activity,
phosphoprotein phosphatase activity,
manganese ion binding,
peptidyl-prolyl cis-trans isomerase activity,
details
CFinderM001769double-strand break repair,
regulation of actin filament polymerization,
DNA metabolic process,
cytoskeleton,
endonuclease activity,
exonuclease activity,
details
CFinderM001855Base_excision_repair
GPI anchor metabolic process,
DNA recombination,
details

4.Expression profilings