|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | RB Transcription_Regulator(from iTAK) | 0.002249965 | GFam | | nucleus, | 0.007953898 | GO:0005634 | | regulation_of_cell_cycle | 0.013478707 | GO:0051726 | | SNF2 Transcription_Regulator(from iTAK) | 0.013732663 | GFam | | Drug_metabolism_-_cytochrome_P450 | 0.028246147 | KEGG | | Metabolism_of_xenobiotics_by_cytochrome_P450 | 0.028246147 | KEGG | | Glutathione_metabolism | 0.029033967 | KEGG |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000019G1620 | transcription regulatory protein SNF2, putative | AT2G46020 (0.00E+00) | | PH01000391G0300 | Helicase/SANT-associated, DNA binding protein | AT3G24880 (0.00E+00) | | PH01001468G0430 | CTC-interacting domain 4 | AT3G14010 (1.30E-67) | | PH01002621G0030 | retinoblastoma-related 1 | AT3G12280 (0.00E+00) | | PH01002777G0070 | Protein of unknown function, DUF584 | AT3G15040 (2.30E-14) | | PH01002809G0260 | glutathione S-transferase phi 8 | AT2G47730 (6.70E-52) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000041 | Oxidative_phosphorylation
respiratory electron transport chain,
mitochondrial inner membrane,
| details | | CFinderM000324 | pyridoxine biosynthetic process,
S-adenosylmethionine_biosynthetic_process
GT8 GlycosylTransferases
pyridoxamine-phosphate oxidase activity,
oxidoreductase activity, acting on the CH-NH2 group of donors,
methionine adenosyltransferase activity,
| details | | CFinderM000481 | proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
SNF2 Transcription_Regulator(from iTAK)
Phagosome
Oxidative_phosphorylation
ATP hydrolysis coupled proton transport,
hydrogen ion transmembrane transporter activity,
RB Transcription_Regulator(from iTAK)
DDT Transcription_Regulator(from iTAK)
clathrin coat of trans-Golgi network vesicle,
clathrin coat of coated pit,
mediator complex,
PHD Transcription_Regulator(from iTAK)
| details | | CFinderM000617 | SNF2 Transcription_Regulator(from iTAK)
helicase activity,
DNA binding,
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides,
| details | | CFinderM001334 | proton-transporting V-type ATPase, V0 domain,
mediator complex,
proton-transporting two-sector ATPase complex, proton-transporting domain,
RNA metabolic process,
regulation of transcription from RNA polymerase II promoter,
ATP hydrolysis coupled proton transport,
| details | | CFinderM001337 | GT41 GlycosylTransferases
DDT Transcription_Regulator(from iTAK)
proton-transporting V-type ATPase, V0 domain,
ATP hydrolysis coupled proton transport,
RNA metabolic process,
| details | | CFinderM001410 | PHD Transcription_Regulator(from iTAK)
mediator complex,
proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
SNF2 Transcription_Regulator(from iTAK)
regulation of transcription from RNA polymerase II promoter,
ATP hydrolysis coupled proton transport,
RNA metabolic process,
zinc ion binding,
protein binding,
RNA_polymerase_II_transcription_cofactor_activity
N-acetyltransferase_activity
hydrogen ion transmembrane transporter activity,
DNA binding,
| details | | CFinderM001411 | proton-transporting V-type ATPase, V0 domain,
proton-transporting two-sector ATPase complex, proton-transporting domain,
RNA metabolic process,
ATP hydrolysis coupled proton transport,
| details | | CFinderM001589 | PHD Transcription_Regulator(from iTAK)
fructose-bisphosphate aldolase activity,
glycolysis,
| details |
4.Expression profilings |
