CFinderM001228's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     

Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
cullin-RING ubiquitin ligase complex,0.005892974GO:0031461
SNF2 Transcription_Regulator(from iTAK)0.010672624GFam
Nucleotide_excision_repair0.042409047KEGG
cell redox homeostasis,0.044072282GO:0045454
Ubiquitin_mediated_proteolysis0.044072282KEGG
ubiquitin-dependent protein catabolic process,0.044072282GO:0006511

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000012G0140thioredoxin family proteinAT4G04950 (0.00E+00)
PH01000561G0580Coiled-coil domain-containing protein 55 (DUF2040)AT2G27285 (1.20E-61)
PH01000767G0400cullin4AT5G46210 (0.00E+00)
PH01001006G0490BTB-POZ and MATH domain 2AT3G06190 (6.30E-54)
PH01001758G0180Beige/BEACH domain ;WD domain, G-beta repeat proteinAT1G03060 (0.00E+00)
PH01002725G0050SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-relatedAT1G50410 (0.00E+00)
PH01005983G0010Chaperone DnaJ-domain superfamily proteinAT2G01710 (7.80E-31)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000008TKL-Pl-4 (from iTAK)
RLK-Pelle_RLCK-VIIa-2 (from iTAK)
transferase activity, transferring phosphorus-containing groups,
protein phosphorylation,
Spliceosome
protein kinase activity,
ATP binding,
protein serine/threonine kinase activity,
exocyst,
chloroplast,
details
CFinderM000239cullin-RING ubiquitin ligase complex,
glycogen_phosphorylase_activity
protein_binding,_bridging
actin filament binding,
phosphatidylserine biosynthetic process,
details
CFinderM000817riboflavin synthase complex,
ubiquitin protein ligase binding,
cullin-RING ubiquitin ligase complex,
Riboflavin_metabolism
riboflavin biosynthetic process,
cellular amino acid biosynthetic process,
Nucleotide_excision_repair
details
CFinderM001168cullin-RING ubiquitin ligase complex,
SNF2 Transcription_Regulator(from iTAK)
glycogen_phosphorylase_activity
Nucleotide_excision_repair
Ubiquitin_mediated_proteolysis
details
CFinderM001279cullin-RING ubiquitin ligase complex,
ubiquitin protein ligase binding,
Nucleotide_excision_repair
Ubiquitin_mediated_proteolysis
details
CFinderM001572Protein_processing_in_endoplasmic_reticulum
heat shock protein binding,
details
CFinderM001573protein refolding,
histone_lysine_methylation
cellular protein metabolic process,
histone_binding
zinc ion binding,
histone-lysine N-methyltransferase activity,
C2H2 Transcription_Regulator(from PlantTFDB)
details

4.Expression profilings