CFinderM001282's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
protein methylation,0.000240916GO:0006479
intracellular,0.005104817GO:0005622
methyltransferase activity,0.022033689GO:0008168
nucleotide binding,0.022033689GO:0000166
nucleic acid binding,0.023541524GO:0003676
IWS1 Transcription_Regulator(from iTAK)0.030181074GFam
ribosome biogenesis,0.04863673GO:0042254
transport,0.04863673GO:0006810

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000087G0500protein arginine methyltransferase 6AT3G20020 (4.40E-57)
PH01000183G0790Transducin/WD40 repeat-like superfamily proteinAT4G21130 (9.10E-75)
PH01000433G0930Ribosomal protein L10 family proteinAT1G25260 (9.30E-81)
PH01000436G0710protein arginine methyltransferase 3AT3G12270 (2.00E-152)
PH01000882G0090Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domainAT5G60980 (5.30E-67)
PH01000996G0070Transducin/WD40 repeat-like superfamily proteinAT4G05410 (1.40E-86)
PH01001113G0360zinc finger (C2H2 type, AN1-like) family proteinAT2G41835 (1.30E-97)
PH01001233G0070TCP-1/cpn60 chaperonin family proteinAT1G24510 (0)
PH01001939G0120nucleolin like 2AT3G18610 (1.60E-53)
PH01002277G0170Transcription elongation factor (TFIIS) family proteinAT5G05140 (8.90E-50)
PH01005790G0030Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domainAT5G60980 (1.40E-79)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000694IWS1 Transcription_Regulator(from iTAK)
details
CFinderM000807E2F/DP Transcription_Regulator(from PlantTFDB)
E2F-DP Transcription_Regulator(from iTAK)
transcription factor complex,
glycerol-3-phosphate dehydrogenase complex,
Glycerophospholipid_metabolism
glycerol-3-phosphate catabolic process,
glycerol-3-phosphate metabolic process,
glycerol-3-phosphate dehydrogenase [NAD+] activity,
details
CFinderM000869Glycerophospholipid_metabolism
glycerol-3-phosphate metabolic process,
glycerol-3-phosphate catabolic process,
glycerol-3-phosphate dehydrogenase complex,
protein methylation,
glycerol-3-phosphate dehydrogenase [NAD+] activity,
details
CFinderM000940nucleic acid binding,
Ribosome_biogenesis_in_eukaryotes
details
CFinderM001004IWS1 Transcription_Regulator(from iTAK)
heme_a_biosynthetic_process
threonyl-tRNA aminoacylation,
tRNA aminoacylation,
threonine-tRNA ligase activity,
Aminoacyl-tRNA_biosynthesis
Porphyrin_and_chlorophyll_metabolism
ligase activity, forming aminoacyl-tRNA and related compounds,
oxidoreductase activity, acting on the CH-CH group of donors,
Oxidative_phosphorylation
nucleotide binding,
tRNA aminoacylation for protein translation,
details
CFinderM001031intracellular,
translation,
structural constituent of ribosome,
protein import into mitochondrial inner membrane,
Ribosome
RLK-Pelle_L-LEC (from iTAK)
large ribosomal subunit,
ribosome biogenesis,
details
CFinderM001283TKL-Pl-4 (from iTAK)
intracellular,
ribosome biogenesis,
details
CFinderM001646Tify Transcription_Regulator(from iTAK)
mRNA_catabolic_process
polyribonucleotide_nucleotidyltransferase_activity
3'-5'-exoribonuclease activity,
RNA processing,
details
CFinderM001773Group-Pl-3 (from iTAK)
phosphoribosylformylglycinamidine cyclo-ligase activity,
'de novo' IMP biosynthetic process,
intracellular,
details

4.Expression profilings


Show details about module gene expression profiling