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1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | metalloendopeptidase activity, | 0.000716118 | GO:0004222 | | Riboflavin_metabolism | 0.002435748 | KEGG | | 6-phosphofructokinase complex, | 0.00486655 | GO:0005945 | | GTP cyclohydrolase II activity, | 0.009459794 | GO:0003935 | | catalytic activity, | 0.009459794 | GO:0003824 | | 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, | 0.009459794 | GO:0008686 | | proteolysis, | 0.013267557 | GO:0006508 | | riboflavin biosynthetic process, | 0.013267557 | GO:0009231 | | metallopeptidase activity, | 0.017635451 | GO:0008237 | | 6-phosphofructokinase activity, | 0.017635451 | GO:0003872 | | glycolysis, | 0.04399086 | GO:0006096 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000062G1100 | Phosphofructokinase family protein | AT1G76550 (0.00E+00) | | PH01000140G0020 | Zincin-like metalloproteases family protein | AT5G65620 (4.00E-130) | | PH01000360G0570 | alanine aminotransferase 2 | AT1G72330 (2.00E-101) | | PH01000429G0970 | Insulinase (Peptidase family M16) protein | AT1G51980 (1.00E-140) | | PH01001412G0460 | GTP cyclohydrolase II | AT5G64300 (0.00E+00) | | PH01003530G0070 | Protein phosphatase 2C family protein | AT5G53140 (6.20E-84) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000421 | pyruvate dehydrogenase complex,
cellular modified amino acid biosynthetic process,
glutathione biosynthetic process,
pyruvate metabolic process,
dihydrolipoyllysine-residue acetyltransferase activity,
glutamate-cysteine ligase activity,
glycogen_phosphorylase_activity
Citrate_cycle_(TCA_cycle)
Glycolysis_/_Gluconeogenesis
Pyruvate_metabolism
Glutathione_metabolism
transferase activity, transferring acyl groups,
metabolic process,
| details | | CFinderM000900 | phosphopyruvate hydratase complex,
glycolysis,
phosphopyruvate hydratase activity,
Alanine,_aspartate_and_glutamate_metabolism
TKL-Pl-6 (from iTAK)
magnesium ion binding,
argininosuccinate synthase activity,
6-phosphofructokinase complex,
arginine biosynthetic process,
| details | | CFinderM000962 | 6-phosphofructokinase complex,
6-phosphofructokinase activity,
glycolysis,
translation_initiation_factor_binding
diphosphate-fructose-6-phosphate 1-phosphotransferase activity,
eukaryotic translation initiation factor 3 complex,
fructose_6-phosphate_metabolic_process
translational initiation,
ATP synthesis coupled proton transport,
hydrogen ion transporting ATP synthase activity, rotational mechanism,
Oxidative_phosphorylation
RNA_transport
| details | | CFinderM001422 | Glycine,_serine_and_threonine_metabolism
small-subunit processome,
mitochondrial proton-transporting ATP synthase complex, coupling factor F(o),
clathrin adaptor complex,
| details | | CFinderM001491 | 3,4-dihydroxy-2-butanone-4-phosphate synthase activity,
glucose-6-phosphate isomerase activity,
sterol_24-C-methyltransferase_activity
GTP cyclohydrolase II activity,
riboflavin biosynthetic process,
steroid biosynthetic process,
gluconeogenesis,
isoprenoid biosynthetic process,
| details | | CFinderM001634 | Citrate_cycle_(TCA_cycle)
Pyruvate_metabolism
Glycolysis_/_Gluconeogenesis
transferase activity, transferring acyl groups,
pyruvate dehydrogenase complex,
dihydrolipoyllysine-residue acetyltransferase activity,
metabolic process,
pyruvate metabolic process,
small-subunit processome,
| details | | CFinderM001686 | Oxidative_phosphorylation
GTnc GlycosylTransferases
mitochondrial proton-transporting ATP synthase complex, coupling factor F(o),
small-subunit processome,
proton-transporting V-type ATPase, V1 domain,
proton-transporting two-sector ATPase complex, catalytic domain,
ATP synthesis coupled proton transport,
ATP metabolic process,
proton transport,
ATP hydrolysis coupled proton transport,
Phagosome
| details | | CFinderM001736 | Oxidative_phosphorylation
proton-transporting V-type ATPase, V1 domain,
mitochondrial proton-transporting ATP synthase complex, coupling factor F(o),
proton-transporting two-sector ATPase complex, catalytic domain,
clathrin adaptor complex,
Phagosome
ATP metabolic process,
proton transport,
ATP synthesis coupled proton transport,
ATP hydrolysis coupled proton transport,
hydrogen ion transmembrane transporter activity,
transferase activity, transferring alkyl or aryl (other than methyl) groups,
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances,
| details | | CFinderM001867 | Pseudo ARR-B Transcription_Regulator(from iTAK)
Riboflavin_metabolism
GTP cyclohydrolase II activity,
3,4-dihydroxy-2-butanone-4-phosphate synthase activity,
mRNA_surveillance_pathway
riboflavin biosynthetic process,
protein catabolic process,
two-component signal transduction system (phosphorelay),
| details | | CFinderM001872 | 3,4-dihydroxy-2-butanone-4-phosphate synthase activity,
GTP cyclohydrolase II activity,
Riboflavin_metabolism
riboflavin biosynthetic process,
isoprenoid biosynthetic process,
nucleic acid binding,
Terpenoid_backbone_biosynthesis
| details |
4.Expression profilings |
