CFinderM001362's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
Protein_processing_in_endoplasmic_reticulum0.007453552KEGG
mannose biosynthetic process,0.015155585GO:0019307
Lysine_degradation0.016421321KEGG
SET Transcription_Regulator(from iTAK)0.017057553GFam
histone_methylation0.025231696GO:0016571
phosphomannomutase activity,0.030197433GO:0004615
histone_lysine_methylation0.036937184GO:0034968

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000053G1610-AT3G13410 (1.10E-32)
PH01000238G0910thioredoxin family proteinAT2G47470 (2.00E-150)
PH01000240G0950-- (-)
PH01000556G0480SU(VAR)3-9 homolog 1AT5G04940 (1.00E-157)
PH01000853G0290Mob1/phocein family proteinAT5G45550 (6.00E-119)
PH01001810G0360Tetratricopeptide repeat (TPR)-like superfamily proteinAT5G21990 (2.00E-153)
PH01001814G0070-AT5G35080 (9.40E-65)
PH01003542G0170NHL domain-containing proteinAT1G70280 (7.00E-136)
PH01003621G0090bZIP proteinAT5G04840 (2.70E-36)
PH01005999G0020phosphomannomutaseAT2G45790 (1.70E-88)
PH01023929G0010cleavage and polyadenylation specificity factor 73-IAT1G61010 (0.00E+00)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000163SET Transcription_Regulator(from iTAK)
histone_methylation
histone_lysine_methylation
nucleus,
RNA-directed RNA polymerase activity,
zinc ion binding,
histone_binding
histone-lysine N-methyltransferase activity,
details
CFinderM000236NAK (from iTAK)
STAT Transcription_Regulator(from PlantTFDB)
Glycine,_serine_and_threonine_metabolism
magnesium_ion_transport
TKL-Pl-5 (from iTAK)
magnesium_ion_transmembrane_transporter_activity
details
CFinderM000323Diterpenoid_biosynthesis
Lysine_degradation
SET Transcription_Regulator(from iTAK)
histone_methylation
electron carrier activity,
heme binding,
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen,
iron ion binding,
histone_lysine_methylation
histone_binding
histone-lysine N-methyltransferase activity,
oxidation-reduction process,
details
CFinderM000341exosome_(RNase_complex)
COP9_signalosome
details
CFinderM000693ornithine_metabolic_process
histone deacetylation,
protein import into nucleus,
ornithine carbamoyltransferase activity,
carboxyl- or carbamoyltransferase activity,
histone deacetylase activity,
Arginine_and_proline_metabolism
cellular amino acid metabolic process,
protein transporter activity,
amino acid binding,
details
CFinderM001014SET Transcription_Regulator(from iTAK)
endoplasmic reticulum,
nucleus,
ubiquitin ligase complex,
histone_methylation
details
CFinderM001101SET Transcription_Regulator(from iTAK)
histone_methylation
histone_lysine_methylation
Lysine_degradation
nucleus,
ubiquitin ligase complex,
histone-lysine N-methyltransferase activity,
histone_binding
RNA_degradation
transcription, DNA-dependent,
protein ubiquitination,
details
CFinderM001149ketol-acid reductoisomerase activity,
branched chain family amino acid biosynthetic process,
cellular amino acid biosynthetic process,
SCY1_SCYL2 (from iTAK)
coenzyme binding,
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor,
Endocytosis
details
CFinderM001187glycogen biosynthetic process,
'de novo' IMP biosynthetic process,
5-(carboxyamino)imidazole_ribonucleotide_mutase_activity
details
CFinderM001195nucleic acid binding,
ARF Transcription_Regulator(from PlantTFDB)
B3-ARF Transcription_Regulator(from iTAK)
C3H Transcription_Regulator(from PlantTFDB)
endoplasmic reticulum,
response to hormone stimulus,
glycerol ether metabolic process,
Protein_processing_in_endoplasmic_reticulum
details
CFinderM001299SNARE_interactions_in_vesicular_transport
Golgi vesicle transport,
bZIP Transcription_Regulator(from PlantTFDB)
details
CFinderM001488STAT Transcription_Regulator(from PlantTFDB)
TKL-Pl-5 (from iTAK)
Lysine_degradation
nucleus,
chloroplast,
SET Transcription_Regulator(from iTAK)
histone_methylation
mRNA processing,
histone_lysine_methylation
details
CFinderM001556RNA_transport
bZIP Transcription_Regulator(from PlantTFDB)
details
CFinderM001583endoplasmic reticulum,
bZIP Transcription_Regulator(from PlantTFDB)
details
CFinderM001584details
CFinderM001705Lysine_degradation
SET Transcription_Regulator(from iTAK)
histone_methylation
histone_lysine_methylation
chloroplast,
histone-lysine N-methyltransferase activity,
histone_binding
ubiquitin-dependent protein catabolic process,
details
CFinderM001739mannose biosynthetic process,
phosphomannomutase activity,
ARF Transcription_Regulator(from PlantTFDB)
SNF2 Transcription_Regulator(from iTAK)
B3-ARF Transcription_Regulator(from iTAK)
details

4.Expression profilings


Show details about module gene expression profiling