CFinderM001377's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
C2H2 Transcription_Regulator(from PlantTFDB)0.037835921GFam

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000004G2930Transmembrane amino acid transporter family proteinAT1G08230 (1.00E-101)
PH01000051G1670Uncharacterised protein family (UPF0497)AT2G36330 (9.90E-14)
PH01000152G1180-- (-)
PH01000287G0350-AT2G17695 (6.70E-58)
PH01001209G0210-- (-)
PH01003903G0070C2H2 and C2HC zinc fingers superfamily proteinAT1G34370 (8.50E-35)
PH01005389G0030P450 reductase 2AT4G30210 (4.00E-167)
PH01165603G0010Pyridoxal phosphate (PLP)-dependent transferases superfamily proteinAT5G51920 (4.40E-40)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000188ubiquitin-dependent protein catabolic process,
details
CFinderM000611WNK_NRBP (from iTAK)
PHD Transcription_Regulator(from iTAK)
details
CFinderM000857RLK-Pelle_WAK_LRK10L-1 (from iTAK)
ATP biosynthetic process,
ATP_catabolic_process
nitrogen compound metabolic process,
Oxidative_phosphorylation
details
CFinderM001342details
CFinderM001343Golgi-associated vesicle,
binding,
Terpenoid_backbone_biosynthesis
guanyl-nucleotide exchange factor activity,
COPI vesicle coat,
membrane coat,
details
CFinderM001541Terpenoid_backbone_biosynthesis
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity,
1,3-beta-D-glucan synthase complex,
(1->3)-beta-D-glucan biosynthetic process,
terpenoid biosynthetic process,
iron-sulfur cluster assembly,
details
CFinderM001575protein methylation,
ubiquitin thiolesterase activity,
ubiquitin-dependent protein catabolic process,
methyltransferase activity,
details
CFinderM001654WNK_NRBP (from iTAK)
RNA_transport
details
CFinderM001750mTERF Transcription_Regulator(from iTAK)
endonuclease activity,
details
CFinderM001829retrograde transport, endosome to Golgi,
proton transport,
hydrogen-translocating pyrophosphatase activity,
inorganic diphosphatase activity,
Ether_lipid_metabolism
WRKY Transcription_Regulator(from PlantTFDB)
Glycerophospholipid_metabolism
Oxidative_phosphorylation
details
CFinderM001887microtubule organizing center,
spindle pole,
nuclear pore,
microtubule cytoskeleton organization,
C2H2 Transcription_Regulator(from PlantTFDB)
RNA_transport
details
CFinderM001892phenylalanyl-tRNA aminoacylation,
Aminoacyl-tRNA_biosynthesis
tRNA aminoacylation,
phenylalanine-tRNA ligase activity,
WRKY Transcription_Regulator(from PlantTFDB)
tRNA binding,
details
CFinderM001893Golgi-associated vesicle,
Terpenoid_backbone_biosynthesis
membrane coat,
COPI vesicle coat,
isoprenoid biosynthetic process,
details

4.Expression profilings