CFinderM001389's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
outer membrane-bounded periplasmic space,0.016372442GO:0030288
MYB_related Transcription_Regulator(from PlantTFDB)0.027677075GFam
MYB-related Transcription_Regulator(from iTAK)0.027677075GFam
Protein_processing_in_endoplasmic_reticulum0.046946751KEGG

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000486G0200glutamate receptor 2.8AT2G29110 (6.60E-88)
PH01000539G0640LRR and NB-ARC domains-containing disease resistance proteinAT3G14460 (4.00E-112)
PH01000564G0790PDI-like 5-2AT1G35620 (1.00E-127)
PH01000769G0620myb domain protein 120AT5G55020 (1.20E-28)
PH01001196G0070autophagy 9 (APG9)AT2G31260 (0.00E+00)
PH01001693G0310Basic-leucine zipper (bZIP) transcription factor family proteinAT1G58110 (2.60E-55)
PH01006712G0010RING/FYVE/PHD zinc finger superfamily proteinAT3G02890 (2.30E-35)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000290autophagy,
Valine,_leucine_and_isoleucine_degradation
Endocytosis
details
CFinderM000884Protein_processing_in_endoplasmic_reticulum
GT48 GlycosylTransferases
HB-other Transcription_Regulator(from PlantTFDB)
HD-ZIP Transcription_Regulator(from PlantTFDB)
Nucleotide_excision_repair
proteasomal ubiquitin-dependent protein catabolic process,
outer membrane-bounded periplasmic space,
1,3-beta-D-glucan synthase complex,
(1->3)-beta-D-glucan biosynthetic process,
nucleotide-excision repair,
details
CFinderM001378IMP biosynthetic process,
purine ribonucleoside monophosphate biosynthetic process,
thiolester_hydrolase_activity
AMP deaminase activity,
deaminase activity,
regulation of ARF GTPase activity,
ARF GTPase activator activity,
Fatty_acid_biosynthesis
Purine_metabolism
fatty acid biosynthetic process,
zinc ion binding,
details
CFinderM001388Protein_processing_in_endoplasmic_reticulum
GT48 GlycosylTransferases
Nucleotide_excision_repair
outer membrane-bounded periplasmic space,
1,3-beta-D-glucan synthase complex,
proteasomal ubiquitin-dependent protein catabolic process,
(1->3)-beta-D-glucan biosynthetic process,
nucleotide-excision repair,
MYB_related Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)
glycerol ether metabolic process,
details
CFinderM001436STE_STE20-Fray (from iTAK)
CAMTA Transcription_Regulator(from PlantTFDB)
Ubiquitin_mediated_proteolysis
details
CFinderM001457mRNA_surveillance_pathway
Diterpenoid_biosynthesis
CAMTA Transcription_Regulator(from PlantTFDB)
protein binding,
mechanically-gated_ion_channel_activity
details
CFinderM001458mRNA_surveillance_pathway
AGC_RSK-2 (from iTAK)
SBP Transcription_Regulator(from PlantTFDB)
cell death,
details
CFinderM001499Glutathione_metabolism
metallopeptidase activity,
ionotropic glutamate receptor activity,
extracellular-glutamate-gated ion channel activity,
outer membrane-bounded periplasmic space,
details

4.Expression profilings

Created with Highcharts 4.1.6Gene expression profiling among different tissue samples012345leaf_SRR2035212leaf_SRR2035327leaf_SRR4450543_CKleaf_SRR4450545_Dehydrationleaf_SRR4450547_Dehydrationleaf_SRR4450549_Coldleaf_SRR4450551_ColdLeaf-2Leaf_ERR105068Root_1Root_3Root_5Root_ERR105075RhizomeRhizome_ERR105074culm_SRR1187864shoot_SAM_Ashoot_MIN_Cshoot_YNO_Ashoot_YNO_Cshoot_MNO_Ashoot_MNO_Cshoot_SAM_Cshoot_YIN_Ashoot_YIN_Cshoot_MIN_Ashoot_SRR3050072shoot_SRR3056056shoot_SRR3521411Shoot_A2Shoot_B1Shoot_B3Shoot_C2Shoot_D1Shoot_D3Bud_1Bud_3panicle_early_ERR105069panicle_flowering_ERR105071PH01000486G0200PH01000539G0640PH01000564G0790PH01000769G0620PH01001196G0070PH01001693G0310PH01006712G0010Highcharts.com