CFinderM001405's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
transcription factor TFIIF complex,0.004124935GO:0005674
transcription initiation from RNA polymerase II promoter,0.038556754GO:0006367
Basal_transcription_factors0.043912148KEGG
Endocytosis0.043912148KEGG
Oxidative_phosphorylation0.043912148KEGG
protein catabolic process,0.049487824GO:0030163

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000376G0230Alpha-helical ferredoxinAT1G79010 (4.50E-90)
PH01000402G0010Transcription initiation factor IIF, beta subunitAT3G52270 (1.60E-66)
PH01000781G0110SNARE-like superfamily proteinAT5G58060 (1.40E-36)
PH01001028G0610FTSH protease 4AT2G26140 (0.00E+00)
PH01001763G0240-AT2G39950 (1.40E-65)
PH01002302G0280Endosomal targeting BRO1-like domain-containing proteinAT1G15130 (0.00E+00)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000800cation:chloride_symporter_activity
SBP Transcription_Regulator(from PlantTFDB)
ion transport,
Endocytosis
details
CFinderM001082IWS1 Transcription_Regulator(from iTAK)
protein catabolic process,
details
CFinderM001083MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
Pseudo ARR-B Transcription_Regulator(from iTAK)
protein import into mitochondrial inner membrane,
transcription, DNA-dependent,
nucleus,
IWS1 Transcription_Regulator(from iTAK)
GNAT Transcription_Regulator(from iTAK)
details
CFinderM001198RLK-Pelle_RLCK-VI (from iTAK)
Oxidative_phosphorylation
details
CFinderM001358spliceosomal complex,
nuclear mRNA splicing, via spliceosome,
details
CFinderM001361transcription factor TFIIF complex,
protein_oligomerization
cell communication,
transcription initiation from RNA polymerase II promoter,
Basal_transcription_factors
phosphatidylinositol binding,
chaperone binding,
bHLH Transcription_Regulator(from PlantTFDB)
details
CFinderM001494GRAS Transcription_Regulator(from PlantTFDB)
protein catabolic process,
details
CFinderM001618transcription factor TFIIF complex,
transcription initiation from RNA polymerase II promoter,
Basal_transcription_factors
Endocytosis
protein catabolic process,
details
CFinderM001721STE_STE11 (from iTAK)
outer membrane,
Endocytosis
details
CFinderM001788protein folding,
protein catabolic process,
details
CFinderM001816transcription factor TFIIF complex,
Basal_transcription_factors
transcription initiation from RNA polymerase II promoter,
protein catabolic process,
details
CFinderM001840transcription factor TFIIF complex,
STE_STE11 (from iTAK)
diphosphomevalonate decarboxylase activity,
ATP binding,
histone deacetylase activity,
histone deacetylation,
transcription initiation from RNA polymerase II promoter,
Basal_transcription_factors
Terpenoid_backbone_biosynthesis
protein catabolic process,
isoprenoid biosynthetic process,
Endocytosis
details
CFinderM001866sterol metabolic process,
Steroid_biosynthesis
cholestenol delta-isomerase activity,
protein catabolic process,
MYB_related Transcription_Regulator(from PlantTFDB)
C3H Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)
details
CFinderM001867Pseudo ARR-B Transcription_Regulator(from iTAK)
Riboflavin_metabolism
GTP cyclohydrolase II activity,
3,4-dihydroxy-2-butanone-4-phosphate synthase activity,
mRNA_surveillance_pathway
riboflavin biosynthetic process,
protein catabolic process,
two-component signal transduction system (phosphorelay),
details

4.Expression profilings