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1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | threonine-type endopeptidase activity, | 0.000485311 | GO:0004298 | | endopeptidase activity, | 0.000485311 | GO:0004175 | | proteolysis involved in cellular protein catabolic process, | 0.00050965 | GO:0051603 | | proteasome core complex, | 0.00050965 | GO:0005839 | | Proteasome | 0.001220309 | KEGG | | RLK-Pelle_LRR-XIV (from iTAK) | 0.001749125 | GFam | | Protein_processing_in_endoplasmic_reticulum | 0.005343369 | KEGG | | proteasome core complex, alpha-subunit complex, | 0.027065477 | GO:0019773 | | Protein_export | 0.035229042 | KEGG |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000191G0780 | 20S proteasome beta subunit G1 | AT1G56450 (8.00E-102) | | PH01000313G0200 | SecY protein transport family protein | AT2G34250 (0) | | PH01000648G0050 | PDI-like 5-1 | AT1G07960 (7.50E-52) | | PH01000762G0710 | translocon-associated protein beta (TRAPB) family protein | AT5G14030 (1.10E-54) | | PH01001120G0110 | WW domain-containing protein | AT3G13225 (4.10E-22) | | PH01001852G0160 | proteasome alpha subunit A1 | AT5G35590 (2.00E-121) | | PH01002580G0020 | RNA recognition motif (RRM)-containing protein | AT3G23900 (1.30E-28) | | PH01002828G0290 | Leucine-rich repeat protein kinase family protein | AT2G16250 (2.00E-104) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000834 | Ubiquitin_mediated_proteolysis
| details | | CFinderM000970 | Protein_processing_in_endoplasmic_reticulum
C3H Transcription_Regulator(from PlantTFDB)
RNA_transport
| details | | CFinderM000984 | proteasome core complex,
threonine-type endopeptidase activity,
endopeptidase activity,
proteolysis involved in cellular protein catabolic process,
Proteasome
thiol oxidase activity,
proteasome core complex, alpha-subunit complex,
Oxidative_phosphorylation
| details | | CFinderM001065 | threonine-type endopeptidase activity,
endopeptidase activity,
proteasome core complex,
proteolysis involved in cellular protein catabolic process,
Proteasome
thiol oxidase activity,
Protein_processing_in_endoplasmic_reticulum
proteasome core complex, alpha-subunit complex,
Retinol_metabolism
| details | | CFinderM001434 | Oxidative_phosphorylation
positive_regulation_of_autophagy
phosphate-containing compound metabolic process,
proton-transporting V-type ATPase, V0 domain,
proton-transporting two-sector ATPase complex, proton-transporting domain,
ATP hydrolysis coupled proton transport,
glycolysis,
fructose-bisphosphate aldolase activity,
inorganic diphosphatase activity,
hydrogen ion transmembrane transporter activity,
| details | | CFinderM001606 | LIM Transcription_Regulator(from iTAK)
mitochondrial proton-transporting ATP synthase complex, catalytic core F(1),
proton-transporting two-sector ATPase complex, catalytic domain,
proton-transporting ATP synthase complex, catalytic core F(1),
ATP biosynthetic process,
ATP metabolic process,
ATP_catabolic_process
actin cytoskeleton organization,
proton transport,
ATP synthesis coupled proton transport,
ATP hydrolysis coupled proton transport,
Phagosome
Oxidative_phosphorylation
| details | | CFinderM001723 | Proteasome
proteolysis involved in cellular protein catabolic process,
protein catabolic process,
proteasome core complex,
mRNA_surveillance_pathway
| details | | CFinderM001748 | methionine metabolic process,
methylenetetrahydrofolate reductase (NADPH) activity,
One_carbon_pool_by_folate
Carbon_fixation_pathways_in_prokaryotes
Protein_export
| details | | CFinderM001776 | Protein_processing_in_endoplasmic_reticulum
U4/U6_x_U5_tri-snRNP_complex
intracellular protein transport,
GTP binding,
intracellular,
nuclear mRNA splicing, via spliceosome,
small GTPase mediated signal transduction,
| details |
4.Expression profilings |
