CFinderM001409's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
Whirly Transcription_Regulator(from PlantTFDB)0.001312377GFam
Glycosylphosphatidylinositol(GPI)-anchor_biosynthesis0.005675248KEGG
phosphatidylinositol N-acetylglucosaminyltransferase activity,0.019847839GO:0017176
GPI anchor biosynthetic process,0.022825105GO:0006506

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000227G0940WHIRLY 2AT1G71260 (6.60E-58)
PH01000309G0900FAD/NAD(P)-binding oxidoreductase family proteinAT5G22140 (1.00E-103)
PH01000345G0120phosphatidylinositolglycan synthase family proteinAT2G34980 (1.20E-97)
PH01001627G0500-- (-)
PH01002800G0100-- (-)
PH01003244G0180XB3 ortholog 5 in Arabidopsis thalianaAT3G23280 (3.10E-79)
PH01004843G0080Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domainAT5G63900 (2.90E-41)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000117nuclear chromosome,
Glycolysis_/_Gluconeogenesis
Ino80_complex
ATP citrate synthase activity,
phosphoglycerate kinase activity,
succinate-CoA ligase (ADP-forming) activity,
details
CFinderM000558Whirly Transcription_Regulator(from PlantTFDB)
COPII_vesicle_coating
aminoacyl-tRNA hydrolase activity,
intracellular,
details
CFinderM000717tRNA processing,
details
CFinderM000886Spliceosome
RNA_degradation
details
CFinderM001279cullin-RING ubiquitin ligase complex,
ubiquitin protein ligase binding,
Nucleotide_excision_repair
Ubiquitin_mediated_proteolysis
details
CFinderM001281phospholipid transport,
phosphatidylinositol metabolic process,
Inositol_phosphate_metabolism
Phosphatidylinositol_signaling_system
cellular protein metabolic process,
Phagosome
details
CFinderM001387Alanine,_aspartate_and_glutamate_metabolism
SBP Transcription_Regulator(from PlantTFDB)
details
CFinderM001529Fanconi_anaemia_nuclear_complex
DNA repair,
Ubiquitin_mediated_proteolysis
details
CFinderM001568FAR1 Transcription_Regulator(from PlantTFDB)
RLK-Pelle_LRR-XV (from iTAK)
details
CFinderM001655transport,
transmembrane transport,
regulation_of_cell_cycle
transporter activity,
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
details
CFinderM001699Valine,_leucine_and_isoleucine_biosynthesis
Valine,_leucine_and_isoleucine_degradation
HB-other Transcription_Regulator(from PlantTFDB)
TALE Transcription_Regulator(from PlantTFDB)
sterol_24-C-methyltransferase_activity
5S rRNA binding,
endodeoxyribonuclease activity, producing 5'-phosphomonoesters,
branched-chain-amino-acid transaminase activity,
Pantothenate_and_CoA_biosynthesis
Steroid_biosynthesis
steroid biosynthetic process,
branched chain family amino acid metabolic process,
ion transport,
details
CFinderM001884single-stranded DNA binding,
DNA_replication
RNA processing,
details

4.Expression profilings