|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | Glycine,_serine_and_threonine_metabolism | 0.00499526 | KEGG | | intracellular, | 0.010090978 | GO:0005622 | | Arachidonic_acid_metabolism | 0.023689693 | KEGG | | glutathione peroxidase activity, | 0.042782172 | GO:0004602 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000145G1150 | Sec14p-like phosphatidylinositol transfer family protein | AT2G21520 (0.00E+00) | | PH01000239G0580 | - | - (-) | | PH01000286G0480 | glutathione peroxidase 7 | AT4G31870 (1.50E-83) | | PH01000957G0440 | phosphoglycerate/bisphosphoglycerate mutase family protein | AT5G22620 (3.00E-125) | | PH01001052G0090 | Oxidoreductase, zinc-binding dehydrogenase family protein | AT1G23740 (4.90E-81) | | PH01002722G0190 | histone deacetylase 14 | AT4G33470 (3.00E-145) | | PH01004567G0060 | ENTH/VHS/GAT family protein | AT2G38410 (1.90E-27) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000016 | protein phosphorylation,
protein kinase activity,
transferase activity, transferring phosphorus-containing groups,
protein serine/threonine kinase activity,
ATP binding,
RLK-Pelle_LRR-XII-1 (from iTAK)
RLK-Pelle_DLSV (from iTAK)
RLK-Pelle_WAK (from iTAK)
ADP_binding
polysaccharide_binding
transmembrane_transporter_activity
WRKY Transcription_Regulator(from PlantTFDB)
recognition of pollen,
transmembrane transport,
defense response,
RLK-Pelle_L-LEC (from iTAK)
membrane,
integral to membrane,
RLK-Pelle_SD-2b (from iTAK)
RLK-Pelle_WAK_LRK10L-1 (from iTAK)
ATPase activity,
substrate-specific transmembrane transporter activity,
RLK-Pelle_LRR-XI-1 (from iTAK)
6-phosphofructokinase complex,
| details | | CFinderM000109 | Glyoxylate_and_dicarboxylate_metabolism
Peroxisome
FMN binding,
Alanine,_aspartate_and_glutamate_metabolism
Glycine,_serine_and_threonine_metabolism
catalytic activity,
| details | | CFinderM000189 | phosphate ion transport,
cellular carbohydrate metabolic process,
malate metabolic process,
L-malate dehydrogenase activity,
inorganic phosphate transmembrane transporter activity,
malate dehydrogenase activity,
Carbon_fixation_in_photosynthetic_organisms
Pyruvate_metabolism
Citrate_cycle_(TCA_cycle)
Glyoxylate_and_dicarboxylate_metabolism
| details | | CFinderM000235 | proton-transporting ATP synthase complex, coupling factor F(o),
intracellular,
Photosynthesis
Oxidative_phosphorylation
ATP synthesis coupled proton transport,
hydrogen ion transmembrane transporter activity,
| details | | CFinderM000392 | malate_transport
Peroxisome
Glyoxylate_and_dicarboxylate_metabolism
glycopeptide_alpha-N-acetylgalactosaminidase_activity
serine-type carboxypeptidase activity,
FMN binding,
| details | | CFinderM000500 | WRKY Transcription_Regulator(from PlantTFDB)
sequence-specific DNA binding,
sequence-specific DNA binding transcription factor activity,
| details | | CFinderM000659 | ATP-dependent peptidase activity,
| details | | CFinderM000829 | RLK-Pelle_LRR-Xa (from iTAK)
alternative_oxidase_activity
isopentenyl-diphosphate delta-isomerase activity,
Terpenoid_backbone_biosynthesis
CAMK_CAMKL-CHK1 (from iTAK)
| details | | CFinderM000981 | alternative_oxidase_activity
Arachidonic_acid_metabolism
Metabolism_of_xenobiotics_by_cytochrome_P450
chloroplast,
structural molecule activity,
| details | | CFinderM001540 | DNA polymerase III complex,
alpha-Linolenic_acid_metabolism
Fatty_acid_metabolism
Terpenoid_backbone_biosynthesis
3-hydroxyacyl-CoA_dehydrogenase_activity
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity,
peptide-methionine-(S)-S-oxide reductase activity,
fatty acid metabolic process,
terpenoid biosynthetic process,
iron-sulfur cluster assembly,
| details | | CFinderM001642 | cis-Golgi network,
peptide-methionine_(R)-S-oxide_reductase_activity
| details | | CFinderM001663 | DNA polymerase III complex,
GRAS Transcription_Regulator(from PlantTFDB)
DNA_replication
DNA-directed DNA polymerase activity,
| details |
4.Expression profilings |
