|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | outer membrane, | 0.002248559 | GO:0019867 | | RLK-Pelle_DLSV (from iTAK) | 0.021191766 | GFam | | Protein_processing_in_endoplasmic_reticulum | 0.040378107 | KEGG |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000006G2410 | HEAT SHOCK PROTEIN 89.1 | AT3G07770 (0.00E+00) | | PH01000087G0110 | Protein kinase superfamily protein | AT3G09010 (8.00E-109) | | PH01000460G0190 | DNA/RNA polymerases superfamily protein | AT5G15700 (0.00E+00) | | PH01000587G0660 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | AT1G72040 (2.00E-154) | | PH01000781G0390 | HIT-type Zinc finger family protein | AT1G04945 (1.90E-34) | | PH01000829G0500 | translocon at the outer envelope membrane of chloroplasts 75-III | AT3G46740 (0.00E+00) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000567 | C2H2 Transcription_Regulator(from PlantTFDB)
Peroxisome
Mismatch_repair
| details | | CFinderM000568 | nuclear chromosome,
Mismatch_repair
Mismatch_repair
mRNA_surveillance_pathway
| details | | CFinderM000825 | outer membrane,
ATP binding,
Mismatch_repair
mismatched DNA binding,
Mismatch_repair
protein refolding,
DNA-directed RNA polymerase activity,
cellular protein metabolic process,
nucleobase-containing compound metabolic process,
| details | | CFinderM000940 | nucleic acid binding,
Ribosome_biogenesis_in_eukaryotes
| details | | CFinderM001166 | DNA_replication
Nucleotide_excision_repair
Mismatch_repair
Riboflavin_metabolism
histone acetylation,
chromatin modification,
chromatin silencing at telomere,
| details | | CFinderM001646 | Tify Transcription_Regulator(from iTAK)
mRNA_catabolic_process
polyribonucleotide_nucleotidyltransferase_activity
3'-5'-exoribonuclease activity,
RNA processing,
| details |
4.Expression profilings |
