Function module details

CFinderM001440's details annotation

Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein

This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function Annotation	FDR	Gene Ontolog
Mismatch_repair	0.011692865	KEGG
nucleotide-excision repair,	0.020793329	GO:0006289
Mismatch_repair	0.020793329	KEGG
nuclear pore,	0.026901044	GO:0005643
nucleobase-containing compound metabolic process,	0.03660257	GO:0006139

2.Module member annotation

Gene ID	Annotation	Arabidopsis ortholog (Blast e-value)
PH01000043G0280	Rad23 UV excision repair protein family	AT1G79650 (2.50E-61)
PH01000389G0640	pentatricopeptide (PPR) repeat-containing protein	AT5G12100 (4.00E-113)
PH01001394G0070	RAD3-like DNA-binding helicase protein	AT1G79950 (0.00E+00)
PH01001556G0320	BRCT domain-containing DNA repair protein	AT3G21480 (4.20E-94)
PH01002923G0150	MUTS homolog 2	AT3G18524 (0.00E+00)
PH01003179G0070	Nucleoporin interacting component (Nup93/Nic96-like) family protein	AT2G41620 (0.00E+00)
PH01003600G0020	-	AT4G27010 (0.00E+00)
PH01004663G0090	pumilio 2	AT2G29190 (1.00E-76)

3.Direct connection functional modules

Module ID	Function Annotation	Overlap condition
CFinderM000567	C2H2 Transcription_Regulator(from PlantTFDB) Peroxisome Mismatch_repair	details
CFinderM000568	nuclear chromosome, Mismatch_repair Mismatch_repair mRNA_surveillance_pathway	details
CFinderM001465	cellular_homeostasis mitochondrial outer membrane, Peroxisome RNA methylation, Mismatch_repair Mismatch_repair C2H2 Transcription_Regulator(from PlantTFDB) RNA_degradation mismatched DNA binding, O-methyltransferase activity, hydrolase_activity,_acting_on_acid_anhydrides RNA methyltransferase activity,	details
CFinderM001758	nuclear pore, MYB-related Transcription_Regulator(from iTAK) MYB_related Transcription_Regulator(from PlantTFDB)	details

4.Expression profilings