|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | regulation of translational initiation, | 0.007492187 | GO:0006446 | | eukaryotic translation initiation factor 3 complex, | 0.028818199 | GO:0005852 | | WRKY Transcription_Regulator(from PlantTFDB) | 0.03798265 | GFam |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000016G1580 | Exostosin family protein | AT1G27440 (0.00E+00) | | PH01000018G0370 | WRKY DNA-binding protein 69 | AT3G58710 (3.60E-42) | | PH01000038G0790 | eukaryotic translation initiation factor 3K | AT4G33250 (7.10E-91) | | PH01000092G1660 | Xanthine/uracil permease family protein | AT5G62890 (0.00E+00) | | PH01000316G0160 | Protein of unknown function (DUF185) | AT1G04900 (1.30E-70) | | PH01000464G0910 | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | AT3G55960 (1.20E-57) | | PH01001083G0160 | long chain acyl-CoA synthetase 9 | AT1G77590 (3.00E-177) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000133 | C2H2 Transcription_Regulator(from PlantTFDB)
RWP-RK Transcription_Regulator(from iTAK)
Nin-like Transcription_Regulator(from PlantTFDB)
carbohydrate phosphorylation,
| details | | CFinderM000238 | Inositol_phosphate_metabolism
Phosphatidylinositol_signaling_system
Phagosome
Ribosome_biogenesis_in_eukaryotes
| details | | CFinderM000433 | Ribosome_biogenesis_in_eukaryotes
ATP-dependent helicase activity,
threonine-tRNA ligase activity,
helicase activity,
| details | | CFinderM000606 | histone_H2A_acetylation
CTP biosynthetic process,
histone_H4_acetylation
protein neddylation,
nucleoside_diphosphate_phosphorylation
UTP biosynthetic process,
GTP biosynthetic process,
carbohydrate phosphorylation,
chromatin remodeling,
| details | | CFinderM001134 | Lysine_biosynthesis
regulation of translational initiation,
eukaryotic translation initiation factor 3 complex,
spliceosomal complex,
Ribosome
| details | | CFinderM001197 | Ribosome
translation,
G2-like Transcription_Regulator(from PlantTFDB)
GARP-G2-like Transcription_Regulator(from iTAK)
L-ascorbic acid binding,
structural constituent of ribosome,
Arginine_and_proline_metabolism
| details | | CFinderM001269 | regulation of translational initiation,
'de novo' IMP biosynthetic process,
autophagy,
phosphoribosylformylglycinamidine cyclo-ligase activity,
eukaryotic translation initiation factor 3 complex,
cytoplasm,
ribosome binding,
| details | | CFinderM001597 | Phosphatidylinositol_signaling_system
Inositol_phosphate_metabolism
phosphatidylinositol metabolic process,
phosphatidylinositol phosphate kinase activity,
Phagosome
cellular protein metabolic process,
C3H Transcription_Regulator(from PlantTFDB)
membrane,
| details | | CFinderM001622 | Aminoacyl-tRNA_biosynthesis
tRNA aminoacylation for protein translation,
aminoacyl-tRNA ligase activity,
cytoplasm,
threonyl-tRNA aminoacylation,
ATP binding,
tyrosine-tRNA ligase activity,
threonine-tRNA ligase activity,
tRNA aminoacylation,
protein catabolic process,
ATP-dependent peptidase activity,
ligase activity, forming aminoacyl-tRNA and related compounds,
| details | | CFinderM001655 | transport,
transmembrane transport,
regulation_of_cell_cycle
transporter activity,
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
| details | | CFinderM001658 | Phosphatidylinositol_signaling_system
Inositol_phosphate_metabolism
phosphatidylinositol metabolic process,
phosphatidylinositol phosphate kinase activity,
Phagosome
cellular protein metabolic process,
TKL-Pl-6 (from iTAK)
| details | | CFinderM001684 | heme_a_biosynthetic_process
peroxisomal membrane,
mitochondrial outer membrane,
protein_import_into_peroxisome_matrix
negative_regulation_of_transcription,_DNA-templated
transcription_corepressor_activity
| details | | CFinderM001693 | translation,
Ribosome
structural constituent of ribosome,
intracellular,
| details | | CFinderM001698 | Steroid_biosynthesis
endodeoxyribonuclease activity, producing 5'-phosphomonoesters,
sterol_24-C-methyltransferase_activity
single-stranded DNA binding,
protein tyrosine phosphatase activity,
protein tyrosine/serine/threonine phosphatase activity,
WRKY Transcription_Regulator(from PlantTFDB)
dephosphorylation,
steroid biosynthetic process,
| details | | CFinderM001703 | Endocytosis
regulation of ARF GTPase activity,
ARF GTPase activator activity,
| details | | CFinderM001735 | TALE Transcription_Regulator(from PlantTFDB)
HB-BELL Transcription_Regulator(from iTAK)
| details | | CFinderM001756 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
Lipoic_acid_metabolism
HB-BELL Transcription_Regulator(from iTAK)
TALE Transcription_Regulator(from PlantTFDB)
aromatic amino acid family biosynthetic process,
lipoate biosynthetic process,
lipoate synthase activity,
3-dehydroquinate synthase activity,
| details | | CFinderM001790 | regulation of translational initiation,
ribosome binding,
eukaryotic translation initiation factor 3 complex,
translation initiation factor activity,
| details | | CFinderM001809 | Lipoic_acid_metabolism
TKL-Pl-6 (from iTAK)
chloroplast,
lipoate biosynthetic process,
lipoate synthase activity,
| details | | CFinderM001854 | HSF Transcription_Regulator(from PlantTFDB)
fatty-acyl-CoA binding,
| details |
4.Expression profilings |
