|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | RLK-Pelle_RLCK-V (from iTAK) | 0.004306034 | GFam | | spermine biosynthetic process, | 0.014972436 | GO:0006597 | | spermidine biosynthetic process, | 0.014972436 | GO:0008295 | | cytoskeleton, | 0.016280409 | GO:0005856 | | Cysteine_and_methionine_metabolism | 0.021532745 | KEGG | | Arginine_and_proline_metabolism | 0.021532745 | KEGG | | microtubule associated complex, | 0.027083322 | GO:0005875 | | adenosylmethionine decarboxylase activity, | 0.049406257 | GO:0004014 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000132G0780 | F-box and associated interaction domains-containing protein | AT3G10240 (1.80E-09) | | PH01000810G0400 | kinesin-like calmodulin-binding protein (ZWICHEL) | AT5G65930 (0.00E+00) | | PH01000873G0130 | Afadin/alpha-actinin-binding protein | AT5G57410 (3.00E-147) | | PH01001208G0410 | Protein kinase superfamily protein | AT2G42960 (2.00E-159) | | PH01001874G0200 | Adenosylmethionine decarboxylase family protein | AT3G25570 (5.00E-94) | | PH01001998G0070 | Single-stranded nucleic acid binding R3H protein | AT2G40960 (3.30E-57) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM001049 | microtubule associated complex,
microtubule-based movement,
microtubule motor activity,
PcG_protein_complex
F-actin capping protein complex,
Sesquiterpenoid_and_triterpenoid_biosynthesis
spindle pole,
WASH_complex
microtubule organizing center,
DNA polymerase III complex,
RLK-Pelle_RLCK-V (from iTAK)
CK1_CK1 (from iTAK)
Pantothenate_and_CoA_biosynthesis
macromolecule biosynthetic process,
| details | | CFinderM001050 | SNARE_interactions_in_vesicular_transport
| details | | CFinderM001285 | PcG_protein_complex
cation:chloride_symporter_activity
SET Transcription_Regulator(from iTAK)
cytoskeleton,
ion transport,
| details | | CFinderM001443 | Fatty_acid_biosynthesis
3-oxoacyl-[acyl-carrier-protein] synthase activity,
translational termination,
mRNA_surveillance_pathway
translation release factor activity, codon specific,
lipid biosynthetic process,
| details | | CFinderM001872 | 3,4-dihydroxy-2-butanone-4-phosphate synthase activity,
GTP cyclohydrolase II activity,
Riboflavin_metabolism
riboflavin biosynthetic process,
isoprenoid biosynthetic process,
nucleic acid binding,
Terpenoid_backbone_biosynthesis
| details | | CFinderM001894 | AGC_NDR (from iTAK)
Golgi apparatus,
membrane coat,
clathrin adaptor complex,
nucleic acid binding,
| details | | CFinderM001895 | phenylalanyl-tRNA aminoacylation,
mitochondrial outer membrane,
Aminoacyl-tRNA_biosynthesis
tRNA aminoacylation,
phenylalanine-tRNA ligase activity,
tRNA binding,
| details |
4.Expression profilings |
