|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | Alanine,_aspartate_and_glutamate_metabolism | 0.001125158 | KEGG | | purine nucleotide biosynthetic process, | 0.006184019 | GO:0006164 | | RLK-Pelle_LRR-Xa (from iTAK) | 0.006186436 | GFam | | adenylosuccinate synthase activity, | 0.009547618 | GO:0004019 | | [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity, | 0.009547618 | GO:0030785 | | AGC_RSK-2 (from iTAK) | 0.013383013 | GFam | | SET Transcription_Regulator(from iTAK) | 0.017125565 | GFam | | chloroplast, | 0.01907992 | GO:0009507 | | Purine_metabolism | 0.040333895 | KEGG | | protein phosphorylation, | 0.042491047 | GO:0006468 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000020G1090 | Regulator of chromosome condensation (RCC1) family protein | AT3G26100 (1.00E-160) | | PH01000426G0180 | adenylosuccinate synthase | AT3G57610 (0.00E+00) | | PH01000773G0480 | Nucleic acid-binding, OB-fold-like protein | AT1G12800 (5.00E-133) | | PH01001157G0040 | BAK1-interacting receptor-like kinase 1 | AT5G48380 (0.00E+00) | | PH01001562G0480 | D6 protein kinase like 1 | AT4G26610 (0.00E+00) | | PH01003338G0030 | Rubisco methyltransferase family protein | AT1G14030 (1.00E-160) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000024 | HB-BELL Transcription_Regulator(from iTAK)
TALE Transcription_Regulator(from PlantTFDB)
photosystem I,
chlorophyll binding,
DNA binding,
Photosynthesis
regulation of transcription, DNA-dependent,
RLK-Pelle_LRR-Xa (from iTAK)
sequence-specific DNA binding,
Photosynthesis
| details | | CFinderM000030 | RLK-Pelle_LRR-Xa (from iTAK)
CAMK_CAMKL-CHK1 (from iTAK)
| details | | CFinderM000034 | RLK-Pelle_LRR-Xa (from iTAK)
fructose_1,6-bisphosphate_1-phosphatase_activity
| details | | CFinderM000065 | RLK-Pelle_LRR-Xa (from iTAK)
fatty-acyl-CoA_reductase_(alcohol-forming)_activity
| details | | CFinderM000075 | regulation of transcription, DNA-dependent,
sequence-specific DNA binding transcription factor activity,
integral to membrane,
| details | | CFinderM000094 | RLK-Pelle_LRR-Xa (from iTAK)
Biosynthesis_of_unsaturated_fatty_acids
Fatty_acid_biosynthesis
fatty acid metabolic process,
| details | | CFinderM000113 | RLK-Pelle_LRR-Xa (from iTAK)
intrinsic to endoplasmic reticulum membrane,
ADP_binding
| details | | CFinderM000247 | RLK-Pelle_LRR-Xa (from iTAK)
protein binding,
translational elongation,
| details | | CFinderM000294 | RLK-Pelle_LRR-Xa (from iTAK)
photosystem I reaction center,
photosystem I,
ATP synthesis coupled proton transport,
Photosynthesis
hydrogen ion transporting ATP synthase activity, rotational mechanism,
| details | | CFinderM000318 | RLK-Pelle_LRR-Xa (from iTAK)
thylakoid membrane organization,
cell proliferation,
growth factor activity,
extracellular region,
photosystem II,
Photosynthesis
| details | | CFinderM000362 | RLK-Pelle_LRR-Xa (from iTAK)
leucyl-tRNA aminoacylation,
guanosine tetraphosphate metabolic process,
Aminoacyl-tRNA_biosynthesis
leucine-tRNA ligase activity,
rRNA processing,
ribosome binding,
aminoacyl-tRNA_editing_activity
tRNA aminoacylation for protein translation,
| details | | CFinderM000373 | RLK-Pelle_LRR-Xa (from iTAK)
SET Transcription_Regulator(from iTAK)
[ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity,
transcription termination, DNA-dependent,
RNA_degradation
photosystem II,
extrinsic to membrane,
oxygen evolving complex,
chloroplast,
protein refolding,
| details | | CFinderM000419 | RLK-Pelle_LRR-Xa (from iTAK)
Ribosome
Ribosome
translation,
rRNA processing,
structural constituent of ribosome,
| details | | CFinderM000424 | carboxylic acid metabolic process,
carboxy-lyase activity,
cellular amino acid metabolic process,
RLK-Pelle_LRR-Xa (from iTAK)
pyridoxal phosphate binding,
Ascorbate_and_aldarate_metabolism
Glutathione_metabolism
| details | | CFinderM000464 | extrinsic to membrane,
oxygen evolving complex,
photosystem II,
Photosynthesis
RLK-Pelle_LRR-Xa (from iTAK)
calcium ion binding,
| details | | CFinderM000484 | RLK-Pelle_LRR-Xa (from iTAK)
sigma factor activity,
heat shock protein binding,
| details | | CFinderM000564 | RLK-Pelle_LRR-Xa (from iTAK)
sigma factor activity,
transcription initiation, DNA-dependent,
| details | | CFinderM000565 | Ubiquinone_and_other_terpenoid-quinone_biosynthesis
leucyl-tRNA aminoacylation,
RLK-Pelle_LRR-Xa (from iTAK)
GT2 GlycosylTransferases
Aminoacyl-tRNA_biosynthesis
SET Transcription_Regulator(from iTAK)
prenyltransferase activity,
leucine-tRNA ligase activity,
aminoacyl-tRNA_editing_activity
| details | | CFinderM000628 | RLK-Pelle_LRR-Xa (from iTAK)
C2H2 Transcription_Regulator(from PlantTFDB)
| details | | CFinderM000669 | RLK-Pelle_LRR-Xa (from iTAK)
copper_ion_transmembrane_transport
HB-BELL Transcription_Regulator(from iTAK)
TALE Transcription_Regulator(from PlantTFDB)
copper ion transmembrane transporter activity,
| details | | CFinderM000829 | RLK-Pelle_LRR-Xa (from iTAK)
alternative_oxidase_activity
isopentenyl-diphosphate delta-isomerase activity,
Terpenoid_backbone_biosynthesis
CAMK_CAMKL-CHK1 (from iTAK)
| details | | CFinderM000859 | RLK-Pelle_LRR-Xa (from iTAK)
transcription termination, DNA-dependent,
thylakoid membrane,
photosystem I,
CAMK_CDPK (from iTAK)
Photosynthesis
| details | | CFinderM000980 | MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
RLK-Pelle_LRR-Xa (from iTAK)
| details | | CFinderM001007 | RLK-Pelle_LRR-Xa (from iTAK)
Terpenoid_backbone_biosynthesis
isopentenyl-diphosphate delta-isomerase activity,
coproporphyrinogen oxidase activity,
porphyrin-containing compound biosynthetic process,
transferase activity, transferring phosphorus-containing groups,
isoprenoid biosynthetic process,
| details | | CFinderM001008 | RLK-Pelle_LRR-Xa (from iTAK)
porphobilinogen synthase activity,
coproporphyrinogen oxidase activity,
tetrapyrrole biosynthetic process,
porphyrin-containing compound biosynthetic process,
Porphyrin_and_chlorophyll_metabolism
| details | | CFinderM001137 | RLK-Pelle_LRR-Xa (from iTAK)
coproporphyrinogen oxidase activity,
porphyrin-containing compound biosynthetic process,
Porphyrin_and_chlorophyll_metabolism
Terpenoid_backbone_biosynthesis
isoprenoid biosynthetic process,
mRNA_surveillance_pathway
| details | | CFinderM001289 | RLK-Pelle_LRR-Xa (from iTAK)
alternative_oxidase_activity
Metabolism_of_xenobiotics_by_cytochrome_P450
Ascorbate_and_aldarate_metabolism
Retinol_metabolism
Porphyrin_and_chlorophyll_metabolism
Pentose_and_glucuronate_interconversions
Drug_metabolism_-_cytochrome_P450
Steroid_hormone_biosynthesis
Drug_metabolism_-_other_enzymes
| details | | CFinderM001346 | plasma membrane,
RLK-Pelle_LRR-Xa (from iTAK)
oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor,
ribonuclease III activity,
| details | | CFinderM001396 | Selenocompound_metabolism
Aminoacyl-tRNA_biosynthesis
RLK-Pelle_LRR-Xa (from iTAK)
tRNA aminoacylation for protein translation,
aminoacyl-tRNA ligase activity,
methionyl-tRNA aminoacylation,
nucleotide binding,
methionine-tRNA ligase activity,
cytoplasm,
| details | | CFinderM001533 | RLK-Pelle_LRR-Xa (from iTAK)
cytochrome b6f complex,
Ubiquinone_and_other_terpenoid-quinone_biosynthesis
translation,
cation binding,
structural constituent of ribosome,
alpha-amylase activity,
large ribosomal subunit,
| details |
4.Expression profilings |
