CFinderM001510's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     

Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
Ribosome_biogenesis_in_eukaryotes0.000669771KEGG
RNA processing,0.012686203GO:0006396
acid-amino acid ligase activity,0.044177173GO:0016881

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000013G2610ubiquitin-conjugating enzyme 32AT3G17000 (3.70E-33)
PH01000181G1330ubiquitin-conjugating enzyme 32AT3G17000 (7.90E-92)
PH01000323G0970elongator protein 2AT1G49540 (0.00E+00)
PH01000977G0150-AT4G28200 (7.00E-179)
PH01001639G0320NOP56-like pre RNA processing ribonucleoproteinAT3G05060 (0.00E+00)
PH01005270G0020ribonuclease PsAT2G47300 (4.30E-31)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000144protein binding,
acid-amino acid ligase activity,
details
CFinderM000587protein binding,
acid-amino acid ligase activity,
details
CFinderM000940nucleic acid binding,
Ribosome_biogenesis_in_eukaryotes
details
CFinderM001079SOS_response
DNA metabolic process,
cellular protein metabolic process,
details
CFinderM001110Ubiquitin_mediated_proteolysis
acid-amino acid ligase activity,
protein neddylation,
cellular protein modification process,
small protein activating enzyme activity,
details
CFinderM001131details
CFinderM001414PHD Transcription_Regulator(from iTAK)
details
CFinderM001415PHD Transcription_Regulator(from iTAK)
details
CFinderM001452'de novo' IMP biosynthetic process,
5-(carboxyamino)imidazole_ribonucleotide_mutase_activity
details
CFinderM001511nuclear pore,
nucleocytoplasmic transport,
RNA processing,
Ribosome_biogenesis_in_eukaryotes
RNA_transport
details
CFinderM001519details
CFinderM001582cellular_homeostasis
Peroxisome
mitochondrial outer membrane,
protein methylation,
details
CFinderM001718phosphoribosyl-AMP cyclohydrolase activity,
histidine biosynthetic process,
RNA modification,
pseudouridine synthesis,
nuclear pore,
details
CFinderM001719nuclear pore,
RNA modification,
pseudouridine synthesis,
pseudouridine synthase activity,
Ribosome_biogenesis_in_eukaryotes
RNA_transport
details
CFinderM001744Ribosome_biogenesis_in_eukaryotes
Aminoacyl-tRNA_biosynthesis
threonyl-tRNA aminoacylation,
threonine-tRNA ligase activity,
tRNA aminoacylation,
tRNA aminoacylation for protein translation,
cellular protein metabolic process,
RNA processing,
ligase activity, forming aminoacyl-tRNA and related compounds,
details
CFinderM001848Valine,_leucine_and_isoleucine_biosynthesis
C5-Branched_dibasic_acid_metabolism
SBP Transcription_Regulator(from PlantTFDB)
Pantothenate_and_CoA_biosynthesis
Butanoate_metabolism
branched chain family amino acid biosynthetic process,
acetolactate synthase activity,
details

4.Expression profilings