CFinderM001516's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
Ribosome_biogenesis_in_eukaryotes0.016946651KEGG
MYB_related Transcription_Regulator(from PlantTFDB)0.023755064GFam
MYB-related Transcription_Regulator(from iTAK)0.023755064GFam

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000074G1160RNA-binding (RRM/RBD/RNP motifs) family proteinAT5G04600 (1.20E-63)
PH01000114G1300vernalization5/VIN3-likeAT4G30200 (4.00E-126)
PH01000606G0580homolog of yeast ADA2 2BAT4G16420 (2.00E-139)
PH01001281G0390las1-like family proteinAT5G12220 (5.50E-35)
PH01002369G0040Ribosomal RNA processing Brix domain proteinAT1G63780 (2.00E-119)
PH01002740G0130-- (-)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000144protein binding,
acid-amino acid ligase activity,
details
CFinderM000341exosome_(RNase_complex)
COP9_signalosome
details
CFinderM000408Group-Pl-3 (from iTAK)
histidine_catabolic_process_to_glutamate_and_formamide
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides,
details
CFinderM000691ornithine carbamoyltransferase activity,
phosphoribosyl-AMP cyclohydrolase activity,
ornithine_metabolic_process
carboxyl- or carbamoyltransferase activity,
histone deacetylase activity,
histone deacetylation,
Histidine_metabolism
histidine biosynthetic process,
Arginine_and_proline_metabolism
cellular amino acid metabolic process,
cellular protein metabolic process,
amino acid binding,
details
CFinderM000717tRNA processing,
details
CFinderM001039acetyl-CoA carboxylase activity,
biotin_carboxylase_activity
Fatty_acid_biosynthesis
Propanoate_metabolism
Pyruvate_metabolism
cytokinesis
microtubule cytoskeleton organization,
ligase activity,
microtubule binding,
details
CFinderM001131details
CFinderM001206Riboflavin_metabolism
riboflavin kinase activity,
riboflavin biosynthetic process,
bZIP Transcription_Regulator(from PlantTFDB)
nucleosome assembly,
details
CFinderM001415PHD Transcription_Regulator(from iTAK)
details
CFinderM001517N-acetyl-gamma-glutamyl-phosphate reductase activity,
cellular amino acid biosynthetic process,
cellular amino acid metabolic process,
details
CFinderM001718phosphoribosyl-AMP cyclohydrolase activity,
histidine biosynthetic process,
RNA modification,
pseudouridine synthesis,
nuclear pore,
details
CFinderM001773Group-Pl-3 (from iTAK)
phosphoribosylformylglycinamidine cyclo-ligase activity,
'de novo' IMP biosynthetic process,
intracellular,
details
CFinderM001848Valine,_leucine_and_isoleucine_biosynthesis
C5-Branched_dibasic_acid_metabolism
SBP Transcription_Regulator(from PlantTFDB)
Pantothenate_and_CoA_biosynthesis
Butanoate_metabolism
branched chain family amino acid biosynthetic process,
acetolactate synthase activity,
details
CFinderM001882Valine,_leucine_and_isoleucine_biosynthesis
C5-Branched_dibasic_acid_metabolism
branched chain family amino acid biosynthetic process,
SBP Transcription_Regulator(from PlantTFDB)
Butanoate_metabolism
Pantothenate_and_CoA_biosynthesis
acetolactate synthase activity,
details

4.Expression profilings