CFinderM001520's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
SWI/SNF-SWI3 Transcription_Regulator(from iTAK)0.001312131GFam
Glycine,_serine_and_threonine_metabolism0.001312623KEGG
L-serine biosynthetic process,0.025494523GO:0006564
RNA metabolic process,0.031805473GO:0016070
Methane_metabolism0.034447105KEGG
phosphoglycerate dehydrogenase activity,0.044769006GO:0004617
glycopeptide_alpha-N-acetylgalactosaminidase_activity0.044769006GO:0033926

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000059G0350LSD1-like 3AT4G16310 (0.00E+00)
PH01000078G1130-AT5G22450 (3.10E-85)
PH01000240G0440Cytochrome b561/ferric reductase transmembrane with DOMON related domainAT3G61750 (1.50E-88)
PH01000273G0700Mitochondrial substrate carrier family proteinAT5G19760 (2.00E-120)
PH01000359G0930Plant neutral invertase family proteinAT1G22650 (2.00E-178)
PH01000793G0170binding;RNA bindingAT2G39260 (8.70E-79)
PH01004505G0030D-3-phosphoglycerate dehydrogenaseAT4G34200 (0.00E+00)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000068cellular protein modification process,
ubiquitin-protein ligase activity,
Ubiquitin_mediated_proteolysis
binding,
intracellular,
protein binding,
CE8 Carbohydrate_Esterases
GH28 Glycoside_Hydrolases
Alfin-like Transcription_Regulator(from iTAK)
SWI/SNF-SWI3 Transcription_Regulator(from iTAK)
TORC1_complex
details
CFinderM000237solute:hydrogen antiporter activity,
details
CFinderM000837glutamyl-tRNA aminoacylation,
guanosine tetraphosphate metabolic process,
tRNA aminoacylation,
Aminoacyl-tRNA_biosynthesis
Porphyrin_and_chlorophyll_metabolism
glutamate-tRNA ligase activity,
ligase activity, forming aminoacyl-tRNA and related compounds,
tRNA binding,
tRNA aminoacylation for protein translation,
details
CFinderM000843ribulose-phosphate 3-epimerase activity,
helicase activity,
SNF2 Transcription_Regulator(from iTAK)
racemase and epimerase activity, acting on carbohydrates and derivatives,
pentose-phosphate shunt,
Carbon_fixation_in_photosynthetic_organisms
Pentose_and_glucuronate_interconversions
Pentose_phosphate_pathway
details
CFinderM000883sterol metabolic process,
nuclear chromosome,
cholestenol delta-isomerase activity,
Nitrogen_metabolism
Steroid_biosynthesis
details
CFinderM000912intracellular,
SWI/SNF-SWI3 Transcription_Regulator(from iTAK)
Ribosome
translation,
cellular protein modification process,
structural constituent of ribosome,
Ubiquitin_mediated_proteolysis
details
CFinderM001175SWI/SNF-SWI3 Transcription_Regulator(from iTAK)
details
CFinderM001247CAMTA Transcription_Regulator(from PlantTFDB)
superoxide metabolic process,
Peroxisome
Protein_export
superoxide dismutase activity,
details
CFinderM001386PHD Transcription_Regulator(from iTAK)
COPII vesicle coat,
Nitrogen_metabolism
ER to Golgi vesicle-mediated transport,
Oxidative_phosphorylation
details
CFinderM001447superoxide metabolic process,
superoxide dismutase activity,
Peroxisome
details
CFinderM001460nucleus,
CAMTA Transcription_Regulator(from PlantTFDB)
Nitrogen_metabolism
Oxidative_phosphorylation
bZIP Transcription_Regulator(from PlantTFDB)
details
CFinderM001513Glycine,_serine_and_threonine_metabolism
GH17 Glycoside_Hydrolases
L-serine biosynthetic process,
phosphoglycerate dehydrogenase activity,
Methane_metabolism
cofactor binding,
details
CFinderM001564Oxidative_phosphorylation
glycopeptide_alpha-N-acetylgalactosaminidase_activity
inorganic diphosphatase activity,
phosphate-containing compound metabolic process,
details

4.Expression profilings