|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | PHD Transcription_Regulator(from iTAK) | 0.010950103 | GFam | | guanyl-nucleotide exchange factor activity, | 0.027214365 | GO:0005085 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000047G1060 | Rho GTPase activation protein (RhoGAP) with PH domain | AT5G19390 (8.00E-107) | | PH01000129G0040 | ubiquitin-specific protease 26 | AT3G49600 (0.00E+00) | | PH01000624G0580 | zinc ion binding | AT1G12470 (6.00E-164) | | PH01000750G0240 | ubiquitin-protein ligases | AT2G39810 (4.80E-92) | | PH01000845G0700 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein | AT3G14980 (9.00E-101) | | PH01001292G0240 | guanyl-nucleotide exchange factors;GTPase binding;GTP binding | AT4G16340 (0) | | PH01001428G0300 | - | AT3G04490 (4.00E-112) | | PH01001450G0190 | Late embryogenesis abundant protein (LEA) family protein | AT3G62580 (1.30E-83) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000188 | ubiquitin-dependent protein catabolic process,
| details | | CFinderM000845 | iron-sulfur cluster assembly,
| details | | CFinderM000914 | tetrapyrrole biosynthetic process,
glutamate-1-semialdehyde 2,1-aminomutase activity,
ubiquitin-dependent protein catabolic process,
| details | | CFinderM001204 | Mre11 complex,
nucleolus,
DNA repair,
| details | | CFinderM001315 | STE_STE-Pl (from iTAK)
| details | | CFinderM001342 | | details | | CFinderM001463 | alpha-Linolenic_acid_metabolism
Fatty_acid_metabolism
GRAS Transcription_Regulator(from PlantTFDB)
fatty acid metabolic process,
3-hydroxyacyl-CoA_dehydrogenase_activity
| details | | CFinderM001492 | mitochondrial inner membrane,
mitochondrial inner membrane presequence translocase complex,
nucleolus,
Ubiquitin_mediated_proteolysis
ribosome biogenesis,
| details | | CFinderM001522 | SNF2 Transcription_Regulator(from iTAK)
nucleolus,
nuclear pore,
RNA_transport
| details | | CFinderM001542 | guanyl-nucleotide exchange factor activity,
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity,
small GTPase mediated signal transduction,
signal transduction,
terpenoid biosynthetic process,
cellular component organization,
Terpenoid_backbone_biosynthesis
actin cytoskeleton organization,
intracellular,
| details | | CFinderM001575 | protein methylation,
ubiquitin thiolesterase activity,
ubiquitin-dependent protein catabolic process,
methyltransferase activity,
| details | | CFinderM001580 | iron-sulfur cluster assembly,
RNA processing,
| details | | CFinderM001659 | protein import into nucleus,
nuclear pore,
| details | | CFinderM001660 | SNARE_interactions_in_vesicular_transport
| details | | CFinderM001676 | Spliceosome
| details | | CFinderM001695 | C3H Transcription_Regulator(from PlantTFDB)
DNA photolyase activity,
| details | | CFinderM001702 | ribosome biogenesis,
nucleolus,
eukaryotic translation initiation factor 3 complex,
RNA_transport
| details | | CFinderM001732 | | details | | CFinderM001803 | spliceosomal complex,
mitosis,
Spliceosome
protein dephosphorylation,
| details | | CFinderM001810 | mitosis,
spliceosomal complex,
Spliceosome
| details | | CFinderM001815 | | details | | CFinderM001838 | ubiquitin-dependent protein catabolic process,
ubiquitin thiolesterase activity,
| details | | CFinderM001861 | SNARE_interactions_in_vesicular_transport
acid-amino acid ligase activity,
Ubiquitin_mediated_proteolysis
mRNA_surveillance_pathway
| details | | CFinderM001876 | Spliceosome
| details |
4.Expression profilings |
