|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | Alanine,_aspartate_and_glutamate_metabolism | 0.007289958 | KEGG | | TAZ Transcription_Regulator(from iTAK) | 0.020594727 | GFam | | Group-Pl-3 (from iTAK) | 0.020594727 | GFam | | CMGC_CLK (from iTAK) | 0.020594727 | GFam | | NF-YC Transcription_Regulator(from PlantTFDB) | 0.020594727 | GFam | | HB-other Transcription_Regulator(from PlantTFDB) | 0.024849285 | GFam | | arginine biosynthetic process, | 0.03171638 | GO:0006526 | | 'de novo' IMP biosynthetic process, | 0.03171638 | GO:0006189 | | eukaryotic translation elongation factor 1 complex, | 0.039900313 | GO:0005853 | | argininosuccinate synthase activity, | 0.044216529 | GO:0004055 | | phosphoribosylformylglycinamidine cyclo-ligase activity, | 0.044216529 | GO:0004641 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000005G2210 | nuclear factor Y, subunit C11 | AT3G12480 (5.40E-41) | | PH01000046G0140 | Homeodomain-like transcriptional regulator | AT5G44180 (0.00E+00) | | PH01000145G0550 | histone acetyltransferase of the CBP family 12 | AT1G16710 (0.00E+00) | | PH01000154G1540 | Protein kinase superfamily protein | AT2G37840 (5.10E-68) | | PH01000432G0460 | Ribonuclease inhibitor | AT3G26000 (7.20E-66) | | PH01000442G0350 | Ribosomal protein S5 domain 2-like superfamily protein | AT3G49080 (1.10E-90) | | PH01000572G0690 | DTW domain-containing protein | AT5G54880 (2.70E-41) | | PH01000618G0370 | FUS3-complementing gene 2 | AT4G24740 (8.00E-154) | | PH01000985G0340 | phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5) | AT3G55010 (3.40E-77) | | PH01001411G0130 | nucleotide repair protein, putative | AT3G05210 (3.20E-99) | | PH01001907G0110 | Translation elongation factor EF1B, gamma chain | AT1G57720 (3.00E-170) | | PH01002073G0270 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | AT4G30100 (0.00E+00) | | PH01002687G0240 | histone acetyltransferase of the CBP family 1 | AT1G79000 (3.00E-151) | | PH01006110G0040 | arginosuccinate synthase family | AT4G24830 (0.00E+00) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000117 | nuclear chromosome,
Glycolysis_/_Gluconeogenesis
Ino80_complex
ATP citrate synthase activity,
phosphoglycerate kinase activity,
succinate-CoA ligase (ADP-forming) activity,
| details | | CFinderM000408 | Group-Pl-3 (from iTAK)
histidine_catabolic_process_to_glutamate_and_formamide
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides,
| details | | CFinderM000623 | intracellular,
Ribosome
translation,
structural constituent of ribosome,
HB-other Transcription_Regulator(from PlantTFDB)
| details | | CFinderM000900 | phosphopyruvate hydratase complex,
glycolysis,
phosphopyruvate hydratase activity,
Alanine,_aspartate_and_glutamate_metabolism
TKL-Pl-6 (from iTAK)
magnesium ion binding,
argininosuccinate synthase activity,
6-phosphofructokinase complex,
arginine biosynthetic process,
| details | | CFinderM001128 | Galactose_metabolism
Porphyrin_and_chlorophyll_metabolism
| details | | CFinderM001134 | Lysine_biosynthesis
regulation of translational initiation,
eukaryotic translation initiation factor 3 complex,
spliceosomal complex,
Ribosome
| details | | CFinderM001173 | HB-other Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001199 | proton-transporting two-sector ATPase complex, catalytic domain,
proton-transporting ATP synthase complex, catalytic core F(1),
CMGC_CDK-PITSLRE (from iTAK)
HB-other Transcription_Regulator(from PlantTFDB)
C3H Transcription_Regulator(from PlantTFDB)
tricarboxylic acid cycle,
ATP synthesis coupled proton transport,
ATP hydrolysis coupled proton transport,
Pyruvate_metabolism
Carbon_fixation_pathways_in_prokaryotes
Methane_metabolism
Carbon_fixation_in_photosynthetic_organisms
| details | | CFinderM001269 | regulation of translational initiation,
'de novo' IMP biosynthetic process,
autophagy,
phosphoribosylformylglycinamidine cyclo-ligase activity,
eukaryotic translation initiation factor 3 complex,
cytoplasm,
ribosome binding,
| details | | CFinderM001325 | galactose metabolic process,
UDP-glucose 4-epimerase activity,
cellular metabolic process,
RNA_degradation
Amino_sugar_and_nucleotide_sugar_metabolism
Galactose_metabolism
| details | | CFinderM001428 | nuclear mRNA splicing, via spliceosome,
spliceosomal complex,
cell volume homeostasis,
COPII_vesicle_coating
lysine biosynthetic process via diaminopimelate,
chloride transport,
dihydrodipicolinate synthase activity,
snRNA_binding
Lysine_biosynthesis
| details | | CFinderM001535 | TAZ Transcription_Regulator(from iTAK)
transcription cofactor activity,
histone acetyltransferase activity,
Oxidative_phosphorylation
peptidyl-prolyl cis-trans isomerase activity,
| details | | CFinderM001544 | RLK-Pelle_LRR-VI-2 (from iTAK)
NF-YC Transcription_Regulator(from PlantTFDB)
nuclear pore,
RNA_transport
| details | | CFinderM001749 | phosphoribosylformylglycinamidine cyclo-ligase activity,
autophagy,
'de novo' IMP biosynthetic process,
cellular protein metabolic process,
| details | | CFinderM001773 | Group-Pl-3 (from iTAK)
phosphoribosylformylglycinamidine cyclo-ligase activity,
'de novo' IMP biosynthetic process,
intracellular,
| details | | CFinderM001834 | phosphopyruvate hydratase complex,
TAZ Transcription_Regulator(from iTAK)
L-malate dehydrogenase activity,
transcription cofactor activity,
malate dehydrogenase activity,
phosphopyruvate hydratase activity,
histone acetyltransferase activity,
malate metabolic process,
cellular carbohydrate metabolic process,
MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
| details |
4.Expression profilings |
