CFinderM001570's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
cis-Golgi network,0.005616832GO:0005801
transcription factor TFIID complex,0.005616832GO:0005669
Basal_transcription_factors0.042857082KEGG

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000037G1230CTC-interacting domain 9AT3G14450 (2.50E-96)
PH01000067G1430RING/FYVE/PHD zinc finger superfamily proteinAT1G32810 (6.50E-86)
PH01000155G1180nucleic acid bindingAT1G27750 (3.90E-82)
PH01000190G0200SNARE-like superfamily proteinAT1G51160 (3.00E-68)
PH01000218G1020TBP-associated factor 4AT5G43130 (3.70E-70)
PH01000242G1240SPA (suppressor of phyA-105) protein familyAT2G46340 (1.00E-140)
PH01000571G0500-AT4G08510 (2.50E-23)
PH01000933G0360cyclophilin 5AT2G29960 (2.40E-89)
PH01004624G0120helicase in vascular tissue and tapetumAT2G30800 (0.00E+00)
PH01004872G0080Pre-mRNA splicing Prp18-interacting factorAT1G65660 (0.00E+00)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000432TAZ Transcription_Regulator(from iTAK)
transcription cofactor activity,
histone acetyltransferase activity,
threonine-type endopeptidase activity,
endopeptidase activity,
peptidyl-prolyl cis-trans isomerase activity,
proteasome core complex,
proteolysis involved in cellular protein catabolic process,
Oxidative_phosphorylation
Proteasome
mRNA_surveillance_pathway
details
CFinderM000534CMGC_GSK (from iTAK)
transcription factor TFIID complex,
intracellular,
Basal_transcription_factors
Phagosome
details
CFinderM001606LIM Transcription_Regulator(from iTAK)
mitochondrial proton-transporting ATP synthase complex, catalytic core F(1),
proton-transporting two-sector ATPase complex, catalytic domain,
proton-transporting ATP synthase complex, catalytic core F(1),
ATP biosynthetic process,
ATP metabolic process,
ATP_catabolic_process
actin cytoskeleton organization,
proton transport,
ATP synthesis coupled proton transport,
ATP hydrolysis coupled proton transport,
Phagosome
Oxidative_phosphorylation
details
CFinderM001635Ribosome
translation,
Ribosome
intracellular,
C3H Transcription_Regulator(from PlantTFDB)
details
CFinderM001786lipid metabolic process,
details
CFinderM001788protein folding,
protein catabolic process,
details
CFinderM001804details
CFinderM001819SNF2 Transcription_Regulator(from iTAK)
cis-Golgi network,
mRNA_surveillance_pathway
details
CFinderM001837Ribosome
ribosome biogenesis,
ribonucleoprotein complex,
large ribosomal subunit,
details
CFinderM001849SNF2 Transcription_Regulator(from iTAK)
mediator complex,
regulation of transcription from RNA polymerase II promoter,
details
CFinderM001866sterol metabolic process,
Steroid_biosynthesis
cholestenol delta-isomerase activity,
protein catabolic process,
MYB_related Transcription_Regulator(from PlantTFDB)
C3H Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)
details
CFinderM001879cis-Golgi network,
details

4.Expression profilings


Show details about module gene expression profiling