CFinderM001577's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
double-strand break repair,0.011340559GO:0006302
tyrosine biosynthetic process,0.011340559GO:0006571
prephenate dehydrogenase (NADP+) activity,0.020967043GO:0004665
protein_binding_involved_in_protein_folding0.020967043GO:0044183
prephenate_dehydrogenase_activity0.020967043GO:0008977
Non-homologous_end-joining0.034214157KEGG
cullin-RING ubiquitin ligase complex,0.037025356GO:0031461
DNA metabolic process,0.040727892GO:0006259
bHLH Transcription_Regulator(from PlantTFDB)0.041488047GFam

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000004G1210transcription factor-relatedAT2G27230 (1.50E-77)
PH01000055G1030DNA repair and meiosis protein (Mre11)AT5G54260 (0.00E+00)
PH01000229G0250tetratricopeptide repeat (TPR)-containing proteinAT5G63200 (1.00E-109)
PH01000258G0150cullin 1AT4G02570 (0)
PH01000357G0620DEAD box RNA helicase 1AT3G01540 (0.00E+00)
PH01000494G0920prephenate dehydrogenase family proteinAT1G15710 (5.00E-64)
PH01002105G0330Glutaredoxin family proteinAT1G77370 (9.30E-34)
PH01002959G0020ARM repeat superfamily proteinAT3G15180 (2.20E-80)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000410Ribosome_biogenesis_in_eukaryotes
IWS1 Transcription_Regulator(from iTAK)
tyrosine biosynthetic process,
ribosomal_large_subunit_biogenesis
ribosomal_large_subunit_export_from_nucleus
small-subunit processome,
cytoplasm,
details
CFinderM001072nucleus,
TLK (from iTAK)
Non-homologous_end-joining
SWI/SNF-BAF60b Transcription_Regulator(from iTAK)
Homologous_recombination
SNF2 Transcription_Regulator(from iTAK)
double-strand break repair,
histone modification,
DNA metabolic process,
transcription initiation, DNA-dependent,
details
CFinderM001160TLK (from iTAK)
cell_cortex

details
CFinderM001231cullin-RING ubiquitin ligase complex,
RNA modification,
ubiquitin-dependent protein catabolic process,
details
CFinderM001357bHLH Transcription_Regulator(from PlantTFDB)
SET Transcription_Regulator(from iTAK)
Lysine_degradation
nucleus,
histone_methylation
histone_lysine_methylation
protein dimerization activity,
details
CFinderM001667spliceosomal_tri-snRNP_complex_assembly
chromosome, centromeric region,
U4/U6_x_U5_tri-snRNP_complex
chromosome,
DNA topological change,
mitosis,
nuclear mRNA splicing, via spliceosome,
details
CFinderM001764U4/U6_x_U5_tri-snRNP_complex
spliceosomal_tri-snRNP_complex_assembly
cullin-RING ubiquitin ligase complex,
ubiquitin protein ligase binding,
cysteine-type endopeptidase inhibitor activity,
nuclear mRNA splicing, via spliceosome,
protein disulfide oxidoreductase activity,
details

4.Expression profilings