CFinderM001583's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
endoplasmic reticulum,0.015216629GO:0005783
bZIP Transcription_Regulator(from PlantTFDB)0.035090476GFam

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000004G3200-- (-)
PH01000168G0530RNA-binding (RRM/RBD/RNP motifs) family proteinAT3G07810 (2.00E-115)
PH01000238G0910thioredoxin family proteinAT2G47470 (2.00E-150)
PH01000949G0370trigalactosyldiacylglycerol2AT3G20320 (9.00E-123)
PH01001870G0190Basic-leucine zipper (bZIP) transcription factor family proteinAT1G06070 (3.00E-50)
PH01003357G0110replication factor C subunit 3AT1G77470 (1.00E-120)
PH01010620G0010Plant protein of unknown function (DUF828)AT5G51640 (4.80E-48)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000341exosome_(RNase_complex)
COP9_signalosome
details
CFinderM000439polygalacturonase activity,
nucleosome assembly,
details
CFinderM000745GMP synthase (glutamine-hydrolyzing) activity,
pyrophosphatase_activity
CMGC_GSK (from iTAK)
protein-arginine_deiminase_activity
details
CFinderM000909Homologous_recombination
DNA_replication
Mismatch_repair
histone-lysine N-methyltransferase activity,
single-stranded DNA binding,
Golgi vesicle transport,
details
CFinderM000995nucleus,
riboflavin kinase activity,
RLK-Pelle_LRR-II (from iTAK)
B3-ARF Transcription_Regulator(from iTAK)
ARF Transcription_Regulator(from PlantTFDB)
Riboflavin_metabolism
DNA_replication
Mismatch_repair
Nucleotide_excision_repair
riboflavin biosynthetic process,
response to hormone stimulus,
details
CFinderM001014SET Transcription_Regulator(from iTAK)
endoplasmic reticulum,
nucleus,
ubiquitin ligase complex,
histone_methylation
details
CFinderM001019protein transport,
details
CFinderM001105Endocytosis
pseudouridine synthesis,
RNA modification,
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
protein_kinase_binding
pseudouridine synthase activity,
details
CFinderM001106Endocytosis
details
CFinderM001187glycogen biosynthetic process,
'de novo' IMP biosynthetic process,
5-(carboxyamino)imidazole_ribonucleotide_mutase_activity
details
CFinderM001195nucleic acid binding,
ARF Transcription_Regulator(from PlantTFDB)
B3-ARF Transcription_Regulator(from iTAK)
C3H Transcription_Regulator(from PlantTFDB)
endoplasmic reticulum,
response to hormone stimulus,
glycerol ether metabolic process,
Protein_processing_in_endoplasmic_reticulum
details
CFinderM001206Riboflavin_metabolism
riboflavin kinase activity,
riboflavin biosynthetic process,
bZIP Transcription_Regulator(from PlantTFDB)
nucleosome assembly,
details
CFinderM001299SNARE_interactions_in_vesicular_transport
Golgi vesicle transport,
bZIP Transcription_Regulator(from PlantTFDB)
details
CFinderM001362Protein_processing_in_endoplasmic_reticulum
mannose biosynthetic process,
Lysine_degradation
SET Transcription_Regulator(from iTAK)
histone_methylation
phosphomannomutase activity,
histone_lysine_methylation
details
CFinderM001556RNA_transport
bZIP Transcription_Regulator(from PlantTFDB)
details
CFinderM001584details
CFinderM001629mRNA_surveillance_pathway
peptide-methionine-(S)-S-oxide reductase activity,
details
CFinderM001875histone deacetylation,
histone deacetylase activity,
DNA_replication
Mismatch_repair
Nucleotide_excision_repair
DNA_replication
details

4.Expression profilings