CFinderM001602's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
SWI/SNF-BAF60b Transcription_Regulator(from iTAK)0.014411802GFam
histone modification,0.020037046GO:0016570
C3H Transcription_Regulator(from PlantTFDB)0.020555929GFam
mRNA_surveillance_pathway0.0255358KEGG
transcription initiation, DNA-dependent,0.036332079GO:0006352

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000311G0400-AT3G17740 (7.00E-180)
PH01000801G0470triglyceride lipases;triglyceride lipasesAT4G13550 (3.00E-126)
PH01002540G0170RNA binding (RRM/RBD/RNP motifs) family proteinAT2G24350 (8.80E-18)
PH01002540G0180-- (-)
PH01003261G0020RING/U-box superfamily protein with ARM repeat domainAT2G23140 (0.00E+00)
PH01004060G0120G2484-1 proteinAT4G17330 (5.00E-165)
PH01004889G0040nucleic acid binding;zinc ion binding;DNA bindingAT2G16485 (1.00E-180)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000234single-stranded DNA binding,
LUG Transcription_Regulator(from iTAK)
G-protein coupled receptor activity,
nucleotide-excision repair,
G-protein coupled receptor signaling pathway,
Nucleotide_excision_repair
nuclease activity,
endonuclease activity,
DNA repair,
details
CFinderM000944TKL-Pl-6 (from iTAK)
Ubiquitin_mediated_proteolysis
details
CFinderM000945Protein_processing_in_endoplasmic_reticulum
details
CFinderM000946SWI/SNF-BAF60b Transcription_Regulator(from iTAK)
histone modification,
C3H Transcription_Regulator(from PlantTFDB)
actin cytoskeleton organization,
transcription initiation, DNA-dependent,
mitochondrial respiratory chain,
sister_chromatid_cohesion
chromosome condensation,
CMGC_MAPK (from iTAK)
actin binding,
chromosome organization,
ribulose-phosphate 3-epimerase activity,
details
CFinderM000970Protein_processing_in_endoplasmic_reticulum
C3H Transcription_Regulator(from PlantTFDB)
RNA_transport
details
CFinderM000971C3H Transcription_Regulator(from PlantTFDB)
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
RNA_transport
details
CFinderM001291ubiquitin-dependent protein catabolic process,
details
CFinderM001322ubiquitin ligase complex,
protein ubiquitination,
DNA_replication
protein binding,
details
CFinderM001445Nucleotide_excision_repair
nucleotide-excision repair,
endonuclease activity,
nuclease activity,
single-stranded DNA binding,
protein binding,
DNA repair,
protein ubiquitination,
details
CFinderM001741protein folding,
Nucleotide_excision_repair
mRNA_surveillance_pathway
Ubiquitin_mediated_proteolysis
peptidyl-prolyl cis-trans isomerase activity,
nucleic acid binding,
details

4.Expression profilings