CFinderM001635's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     

Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
Ribosome0.010306557KEGG
translation,0.011563581GO:0006412
Ribosome0.013257322KEGG
intracellular,0.019877944GO:0005622
C3H Transcription_Regulator(from PlantTFDB)0.026795391GFam

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000008G20902-oxoacid dehydrogenases acyltransferase family proteinAT3G25860 (8.50E-78)
PH01000087G1380CCCH-type zinc finger family proteinAT2G02160 (5.20E-34)
PH01000749G0490phosphoinositide bindingAT1G61690 (7.10E-77)
PH01000948G0300RING/U-box superfamily proteinAT4G34100 (0.00E+00)
PH01001720G0330NAD(P)-binding Rossmann-fold superfamily proteinAT2G05990 (2.60E-69)
PH01001897G0050Ribosomal protein L7Ae/L30e/S12e/Gadd45 family proteinAT1G36240 (2.40E-48)
PH01003328G0010ribosomal protein L23AAAT2G39460 (7.40E-55)
PH01004872G0080Pre-mRNA splicing Prp18-interacting factorAT1G65660 (0.00E+00)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000593nicotinate nucleotide salvage,
diphosphomevalonate decarboxylase activity,
nicotinate phosphoribosyltransferase activity,
nicotinate-nucleotide diphosphorylase (carboxylating) activity,
NAD biosynthetic process,
Nicotinate_and_nicotinamide_metabolism
isoprenoid biosynthetic process,
Terpenoid_backbone_biosynthesis
large ribosomal subunit,
details
CFinderM000599mRNA_cis_splicing,_via_spliceosome
nuclear_cap_binding_complex
RNA_cap_binding
hydro-lyase activity,
fatty acid biosynthetic process,
Biotin_metabolism
Fatty_acid_biosynthesis
details
CFinderM001065threonine-type endopeptidase activity,
endopeptidase activity,
proteasome core complex,
proteolysis involved in cellular protein catabolic process,
Proteasome
thiol oxidase activity,
Protein_processing_in_endoplasmic_reticulum
proteasome core complex, alpha-subunit complex,
Retinol_metabolism
details
CFinderM001275HB-other Transcription_Regulator(from PlantTFDB)
mRNA_surveillance_pathway
details
CFinderM001468IWS1 Transcription_Regulator(from iTAK)
Biotin_metabolism
Fatty_acid_biosynthesis
details
CFinderM001494GRAS Transcription_Regulator(from PlantTFDB)
protein catabolic process,
details
CFinderM001570cis-Golgi network,
transcription factor TFIID complex,
Basal_transcription_factors
details
CFinderM001823large ribosomal subunit,
details
CFinderM001837Ribosome
ribosome biogenesis,
ribonucleoprotein complex,
large ribosomal subunit,
details
CFinderM001840transcription factor TFIIF complex,
STE_STE11 (from iTAK)
diphosphomevalonate decarboxylase activity,
ATP binding,
histone deacetylase activity,
histone deacetylation,
transcription initiation from RNA polymerase II promoter,
Basal_transcription_factors
Terpenoid_backbone_biosynthesis
protein catabolic process,
isoprenoid biosynthetic process,
Endocytosis
details
CFinderM001866sterol metabolic process,
Steroid_biosynthesis
cholestenol delta-isomerase activity,
protein catabolic process,
MYB_related Transcription_Regulator(from PlantTFDB)
C3H Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)
details

4.Expression profilings