CFinderM001640's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
TLK (from iTAK)0.002812236GFam
transcription factor TFIID complex,0.006745676GO:0005669
SNF2 Transcription_Regulator(from iTAK)0.013732663GFam
transcription initiation, DNA-dependent,0.022436445GO:0006352
Nucleotide_excision_repair0.036388081KEGG
Ubiquitin_mediated_proteolysis0.037857009KEGG

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000002G1820-- (-)
PH01000287G1140SNF2 domain-containing protein / helicase domain-containing proteinAT2G44980 (6.00E-107)
PH01000343G0230TBP-associated factor 4AT5G43130 (1.20E-52)
PH01000391G0210damaged DNA binding protein 1AAT4G05420 (0.00E+00)
PH01000606G0880Protein kinase superfamily proteinAT5G20930 (2.00E-114)
PH01001032G0430Tetratricopeptide repeat (TPR)-like superfamily proteinAT5G13230 (0.00E+00)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000809glucose-6-phosphate isomerase activity,
transcription factor TFIID complex,
gluconeogenesis,
transcription initiation, DNA-dependent,
glycolysis,
Nucleotide_excision_repair
Ubiquitin_mediated_proteolysis
details
CFinderM001072nucleus,
TLK (from iTAK)
Non-homologous_end-joining
SWI/SNF-BAF60b Transcription_Regulator(from iTAK)
Homologous_recombination
SNF2 Transcription_Regulator(from iTAK)
double-strand break repair,
histone modification,
DNA metabolic process,
transcription initiation, DNA-dependent,
details
CFinderM001160TLK (from iTAK)
cell_cortex

details
CFinderM001210Peroxisome
protein refolding,
Nucleotide_excision_repair
Ubiquitin_mediated_proteolysis
cellular protein metabolic process,
details
CFinderM001607mediator complex,
nucleus,
regulation of transcription from RNA polymerase II promoter,
Nucleotide_excision_repair
Ubiquitin_mediated_proteolysis
RNA_polymerase_II_transcription_cofactor_activity
details

4.Expression profilings