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1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | Oxidative_phosphorylation | 0.000729477 | KEGG | | GTnc GlycosylTransferases | 0.005613495 | GFam | | mitochondrial proton-transporting ATP synthase complex, coupling factor F(o), | 0.006244044 | GO:0000276 | | small-subunit processome, | 0.006244044 | GO:0032040 | | proton-transporting V-type ATPase, V1 domain, | 0.006244044 | GO:0033180 | | proton-transporting two-sector ATPase complex, catalytic domain, | 0.006244044 | GO:0033178 | | ATP synthesis coupled proton transport, | 0.021877719 | GO:0015986 | | ATP metabolic process, | 0.021877719 | GO:0046034 | | proton transport, | 0.021877719 | GO:0015992 | | ATP hydrolysis coupled proton transport, | 0.021877719 | GO:0015991 | | Phagosome | 0.031511271 | KEGG |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000031G1220 | Nucleotide-diphospho-sugar transferases superfamily protein | AT2G19880 (0.00E+00) | | PH01000048G1100 | ATPase, V1 complex, subunit B protein | AT4G38510 (0.00E+00) | | PH01000360G0570 | alanine aminotransferase 2 | AT1G72330 (2.00E-101) | | PH01000713G0320 | Carbohydrate-binding-like fold | AT3G62360 (0.00E+00) | | PH01001137G0250 | ATP synthase D chain, mitochondrial | AT3G52300 (1.80E-74) | | PH01001726G0180 | AAA-type ATPase family protein | AT4G04910 (1.00E-163) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000305 | small-subunit processome,
regulation of ARF GTPase activity,
GT2 GlycosylTransferases
Starch_and_sucrose_metabolism
Endocytosis
| details | | CFinderM000421 | pyruvate dehydrogenase complex,
cellular modified amino acid biosynthetic process,
glutathione biosynthetic process,
pyruvate metabolic process,
dihydrolipoyllysine-residue acetyltransferase activity,
glutamate-cysteine ligase activity,
glycogen_phosphorylase_activity
Citrate_cycle_(TCA_cycle)
Glycolysis_/_Gluconeogenesis
Pyruvate_metabolism
Glutathione_metabolism
transferase activity, transferring acyl groups,
metabolic process,
| details | | CFinderM000962 | 6-phosphofructokinase complex,
6-phosphofructokinase activity,
glycolysis,
translation_initiation_factor_binding
diphosphate-fructose-6-phosphate 1-phosphotransferase activity,
eukaryotic translation initiation factor 3 complex,
fructose_6-phosphate_metabolic_process
translational initiation,
ATP synthesis coupled proton transport,
hydrogen ion transporting ATP synthase activity, rotational mechanism,
Oxidative_phosphorylation
RNA_transport
| details | | CFinderM001294 | small-subunit processome,
DNA integration,
ubiquitin-dependent protein catabolic process,
| details | | CFinderM001312 | metalloendopeptidase activity,
Riboflavin_metabolism
6-phosphofructokinase complex,
GTP cyclohydrolase II activity,
catalytic activity,
3,4-dihydroxy-2-butanone-4-phosphate synthase activity,
proteolysis,
riboflavin biosynthetic process,
metallopeptidase activity,
6-phosphofructokinase activity,
glycolysis,
| details | | CFinderM001422 | Glycine,_serine_and_threonine_metabolism
small-subunit processome,
mitochondrial proton-transporting ATP synthase complex, coupling factor F(o),
clathrin adaptor complex,
| details | | CFinderM001608 | pyruvate dehydrogenase complex,
dihydrolipoyllysine-residue acetyltransferase activity,
pyruvate metabolic process,
protein processing,
small-subunit processome,
integral to membrane,
transferase activity, transferring acyl groups,
mRNA_surveillance_pathway
Pyruvate_metabolism
Glycolysis_/_Gluconeogenesis
Citrate_cycle_(TCA_cycle)
| details | | CFinderM001634 | Citrate_cycle_(TCA_cycle)
Pyruvate_metabolism
Glycolysis_/_Gluconeogenesis
transferase activity, transferring acyl groups,
pyruvate dehydrogenase complex,
dihydrolipoyllysine-residue acetyltransferase activity,
metabolic process,
pyruvate metabolic process,
small-subunit processome,
| details | | CFinderM001736 | Oxidative_phosphorylation
proton-transporting V-type ATPase, V1 domain,
mitochondrial proton-transporting ATP synthase complex, coupling factor F(o),
proton-transporting two-sector ATPase complex, catalytic domain,
clathrin adaptor complex,
Phagosome
ATP metabolic process,
proton transport,
ATP synthesis coupled proton transport,
ATP hydrolysis coupled proton transport,
hydrogen ion transmembrane transporter activity,
transferase activity, transferring alkyl or aryl (other than methyl) groups,
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances,
| details |
4.Expression profilings |
