|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | TKL-Pl-4 (from iTAK) | 0.007105984 | GFam | | carbohydrate phosphorylation, | 0.008562366 | GO:0046835 | | Ribosome | 0.010277156 | KEGG | | translation, | 0.011978324 | GO:0006412 | | galactose metabolic process, | 0.012117702 | GO:0006012 | | intracellular, | 0.020125329 | GO:0005622 | | galactokinase activity, | 0.021966918 | GO:0004335 | | Galactose_metabolism | 0.027465325 | KEGG | | Amino_sugar_and_nucleotide_sugar_metabolism | 0.02846825 | KEGG | | structural constituent of ribosome, | 0.030730624 | GO:0003735 | | kinase activity, | 0.047513237 | GO:0016301 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000040G1260 | Mevalonate/galactokinase family protein | AT3G06580 (0.00E+00) | | PH01000177G0610 | Protein of unknown function (DUF1666) | AT5G39785 (4.50E-90) | | PH01001398G0110 | F-box family protein | AT5G07610 (3.90E-18) | | PH01002476G0330 | Protein kinase superfamily protein | AT5G01850 (3.30E-88) | | PH01002914G0110 | XB3 ortholog 5 in Arabidopsis thaliana | AT3G23280 (2.10E-78) | | PH01004612G0030 | Protein of unknown function (DUF1666) | AT5G39785 (1.10E-88) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000133 | C2H2 Transcription_Regulator(from PlantTFDB)
RWP-RK Transcription_Regulator(from iTAK)
Nin-like Transcription_Regulator(from PlantTFDB)
carbohydrate phosphorylation,
| details | | CFinderM000319 | nucleoside_diphosphate_phosphorylation
carbohydrate phosphorylation,
histone_H4_acetylation
UTP biosynthetic process,
CTP biosynthetic process,
histone_H2A_acetylation
GTP biosynthetic process,
aromatic amino acid family metabolic process,
chromatin remodeling,
| details | | CFinderM000475 | TKL-Pl-6 (from iTAK)
carbohydrate phosphorylation,
RLK-Pelle_RLCK-VIIa-2 (from iTAK)
galactokinase activity,
diphosphate-fructose-6-phosphate 1-phosphotransferase activity,
fructose_6-phosphate_metabolic_process
galactose metabolic process,
Fructose_and_mannose_metabolism
Galactose_metabolism
ATP binding,
6-phosphofructokinase activity,
kinase activity,
| details | | CFinderM000606 | histone_H2A_acetylation
CTP biosynthetic process,
histone_H4_acetylation
protein neddylation,
nucleoside_diphosphate_phosphorylation
UTP biosynthetic process,
GTP biosynthetic process,
carbohydrate phosphorylation,
chromatin remodeling,
| details | | CFinderM000824 | cytoplasm,
aromatic amino acid family metabolic process,
carbohydrate phosphorylation,
galactose metabolic process,
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen,
galactokinase activity,
iron ion binding,
heme binding,
electron carrier activity,
kinase activity,
Galactose_metabolism
Amino_sugar_and_nucleotide_sugar_metabolism
| details | | CFinderM000915 | UTP biosynthetic process,
nucleoside_diphosphate_phosphorylation
CTP biosynthetic process,
GTP biosynthetic process,
regulation of actin filament polymerization,
nucleoside diphosphate kinase activity,
cytoskeleton,
Pyrimidine_metabolism
Purine_metabolism
| details | | CFinderM001197 | Ribosome
translation,
G2-like Transcription_Regulator(from PlantTFDB)
GARP-G2-like Transcription_Regulator(from iTAK)
L-ascorbic acid binding,
structural constituent of ribosome,
Arginine_and_proline_metabolism
| details | | CFinderM001536 | carbohydrate phosphorylation,
galactose metabolic process,
CAMK_CDPK (from iTAK)
Others Transcription_Regulator(from iTAK)
galactokinase activity,
Galactose_metabolism
Amino_sugar_and_nucleotide_sugar_metabolism
| details | | CFinderM001587 | Valine,_leucine_and_isoleucine_biosynthesis
Valine,_leucine_and_isoleucine_degradation
nucleoside_diphosphate_phosphorylation
branched chain family amino acid metabolic process,
CTP biosynthetic process,
GTP biosynthetic process,
UTP biosynthetic process,
nucleoside diphosphate kinase activity,
branched-chain-amino-acid transaminase activity,
Pantothenate_and_CoA_biosynthesis
| details | | CFinderM001683 | Steroid_biosynthesis
RLK-Pelle_WAK_LRK10L-1 (from iTAK)
TKL-Pl-6 (from iTAK)
sterol_24-C-methyltransferase_activity
protein serine/threonine kinase activity,
protein phosphorylation,
steroid biosynthetic process,
single-stranded DNA binding,
protein kinase activity,
transferase activity, transferring phosphorus-containing groups,
TKL-Pl-4 (from iTAK)
GARP-G2-like Transcription_Regulator(from iTAK)
G2-like Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001693 | translation,
Ribosome
structural constituent of ribosome,
intracellular,
| details | | CFinderM001735 | TALE Transcription_Regulator(from PlantTFDB)
HB-BELL Transcription_Regulator(from iTAK)
| details | | CFinderM001756 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
Lipoic_acid_metabolism
HB-BELL Transcription_Regulator(from iTAK)
TALE Transcription_Regulator(from PlantTFDB)
aromatic amino acid family biosynthetic process,
lipoate biosynthetic process,
lipoate synthase activity,
3-dehydroquinate synthase activity,
| details | | CFinderM001769 | double-strand break repair,
regulation of actin filament polymerization,
DNA metabolic process,
cytoskeleton,
endonuclease activity,
exonuclease activity,
| details | | CFinderM001877 | HD-ZIP Transcription_Regulator(from PlantTFDB)
HB-BELL Transcription_Regulator(from iTAK)
HB-HD-ZIP Transcription_Regulator(from iTAK)
TALE Transcription_Regulator(from PlantTFDB)
membrane,
| details |
4.Expression profilings |
