|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | Endocytosis | 0.006249902 | KEGG | | HSF Transcription_Regulator(from PlantTFDB) | 0.008980189 | GFam | | single-stranded DNA binding, | 0.036353106 | GO:0003697 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000451G0190 | C2 calcium/lipid-binding plant phosphoribosyltransferase family protein | AT4G11610 (0.00E+00) | | PH01000775G0310 | mitochondrially targeted single-stranded DNA binding protein | AT4G11060 (9.40E-57) | | PH01001018G0530 | winged-helix DNA-binding transcription factor family protein | AT4G13980 (2.00E-89) | | PH01001234G0310 | Adaptin ear-binding coat-associated protein 1 NECAP-1 | AT3G58600 (5.30E-53) | | PH01001484G0450 | Ribosomal protein L4/L1 family | AT2G20060 (9.00E-102) | | PH01001649G0250 | prohibitin 2 | AT1G03860 (8.00E-122) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000319 | nucleoside_diphosphate_phosphorylation
carbohydrate phosphorylation,
histone_H4_acetylation
UTP biosynthetic process,
CTP biosynthetic process,
histone_H2A_acetylation
GTP biosynthetic process,
aromatic amino acid family metabolic process,
chromatin remodeling,
| details | | CFinderM000526 | Phenylpropanoid_biosynthesis
Phenylalanine_metabolism
Stilbenoid,_diarylheptanoid_and_gingerol_biosynthesis
cellular metabolic process,
coenzyme binding,
Flavonoid_biosynthesis
Ubiquinone_and_other_terpenoid-quinone_biosynthesis
| details | | CFinderM000606 | histone_H2A_acetylation
CTP biosynthetic process,
histone_H4_acetylation
protein neddylation,
nucleoside_diphosphate_phosphorylation
UTP biosynthetic process,
GTP biosynthetic process,
carbohydrate phosphorylation,
chromatin remodeling,
| details | | CFinderM000724 | HSF Transcription_Regulator(from PlantTFDB)
metabolic process,
sterol_24-C-methyltransferase_activity
Steroid_biosynthesis
protein kinase C-activating G-protein coupled receptor signaling pathway,
steroid biosynthetic process,
diacylglycerol kinase activity,
NAD+ kinase activity,
| details | | CFinderM000816 | CMGC_CDK-CRK7-CDK9 (from iTAK)
| details | | CFinderM000925 | Ribosome
translation,
fructose_6-phosphate_metabolic_process
Fructose_and_mannose_metabolism
GARP-G2-like Transcription_Regulator(from iTAK)
G2-like Transcription_Regulator(from PlantTFDB)
diphosphate-fructose-6-phosphate 1-phosphotransferase activity,
structural constituent of ribosome,
large ribosomal subunit,
6-phosphofructokinase complex,
6-phosphofructokinase activity,
| details | | CFinderM001062 | HSF Transcription_Regulator(from PlantTFDB)
NAD+ kinase activity,
diacylglycerol kinase activity,
protein kinase C-activating G-protein coupled receptor signaling pathway,
| details | | CFinderM001156 | single-stranded DNA binding,
DNA_replication
| details | | CFinderM001197 | Ribosome
translation,
G2-like Transcription_Regulator(from PlantTFDB)
GARP-G2-like Transcription_Regulator(from iTAK)
L-ascorbic acid binding,
structural constituent of ribosome,
Arginine_and_proline_metabolism
| details | | CFinderM001206 | Riboflavin_metabolism
riboflavin kinase activity,
riboflavin biosynthetic process,
bZIP Transcription_Regulator(from PlantTFDB)
nucleosome assembly,
| details | | CFinderM001212 | SCY1_SCYL2 (from iTAK)
Ribosome
translation,
structural constituent of ribosome,
| details | | CFinderM001213 | Lipoic_acid_metabolism
RLK-Pelle_CrRLK1L-1 (from iTAK)
TKL-Pl-6 (from iTAK)
lipoate biosynthetic process,
chloroplast,
| details | | CFinderM001250 | Endocytosis
cysteine-type endopeptidase activity,
| details | | CFinderM001273 | | details | | CFinderM001469 | FAR1 Transcription_Regulator(from PlantTFDB)
CMGC_CDK-CRK7-CDK9 (from iTAK)
RNA_degradation
membrane,
| details | | CFinderM001568 | FAR1 Transcription_Regulator(from PlantTFDB)
RLK-Pelle_LRR-XV (from iTAK)
| details | | CFinderM001630 | GTnc GlycosylTransferases
HSF Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001632 | translation,
Ribosome
structural constituent of ribosome,
intracellular,
Ribosome
HSF Transcription_Regulator(from PlantTFDB)
RLK-Pelle_WAK_LRK10L-1 (from iTAK)
large ribosomal subunit,
| details | | CFinderM001682 | RLK-Pelle_WAK_LRK10L-1 (from iTAK)
Steroid_biosynthesis
sterol_24-C-methyltransferase_activity
steroid biosynthetic process,
single-stranded DNA binding,
| details | | CFinderM001683 | Steroid_biosynthesis
RLK-Pelle_WAK_LRK10L-1 (from iTAK)
TKL-Pl-6 (from iTAK)
sterol_24-C-methyltransferase_activity
protein serine/threonine kinase activity,
protein phosphorylation,
steroid biosynthetic process,
single-stranded DNA binding,
protein kinase activity,
transferase activity, transferring phosphorus-containing groups,
TKL-Pl-4 (from iTAK)
GARP-G2-like Transcription_Regulator(from iTAK)
G2-like Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001693 | translation,
Ribosome
structural constituent of ribosome,
intracellular,
| details | | CFinderM001698 | Steroid_biosynthesis
endodeoxyribonuclease activity, producing 5'-phosphomonoesters,
sterol_24-C-methyltransferase_activity
single-stranded DNA binding,
protein tyrosine phosphatase activity,
protein tyrosine/serine/threonine phosphatase activity,
WRKY Transcription_Regulator(from PlantTFDB)
dephosphorylation,
steroid biosynthetic process,
| details | | CFinderM001720 | RNA_polymerase_II_transcription_cofactor_activity
NAD+ ADP-ribosyltransferase activity,
mediator complex,
nuclear pore,
regulation of transcription from RNA polymerase II promoter,
protein transport,
| details | | CFinderM001754 | Endocytosis
proton-transporting V-type ATPase, V0 domain,
cysteine-type endopeptidase activity,
hydrogen ion transmembrane transporter activity,
ATP hydrolysis coupled proton transport,
Oxidative_phosphorylation
Phagosome
| details | | CFinderM001761 | large ribosomal subunit,
intracellular,
| details | | CFinderM001808 | protein binding,
Peroxisome
RNA_degradation
Endocytosis
| details | | CFinderM001809 | Lipoic_acid_metabolism
TKL-Pl-6 (from iTAK)
chloroplast,
lipoate biosynthetic process,
lipoate synthase activity,
| details | | CFinderM001852 | calcium-dependent phospholipid binding,
single-stranded DNA binding,
DNA_replication
| details | | CFinderM001854 | HSF Transcription_Regulator(from PlantTFDB)
fatty-acyl-CoA binding,
| details | | CFinderM001884 | single-stranded DNA binding,
DNA_replication
RNA processing,
| details |
4.Expression profilings |
