|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis | 0.0016875 | KEGG | | Lipoic_acid_metabolism | 0.00295128 | KEGG | | HB-BELL Transcription_Regulator(from iTAK) | 0.01470485 | GFam | | TALE Transcription_Regulator(from PlantTFDB) | 0.01470485 | GFam | | aromatic amino acid family biosynthetic process, | 0.030957461 | GO:0009073 | | lipoate biosynthetic process, | 0.030957461 | GO:0009107 | | lipoate synthase activity, | 0.036633769 | GO:0016992 | | 3-dehydroquinate synthase activity, | 0.036633769 | GO:0003856 |
2.Module member annotation
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000133 | C2H2 Transcription_Regulator(from PlantTFDB)
RWP-RK Transcription_Regulator(from iTAK)
Nin-like Transcription_Regulator(from PlantTFDB)
carbohydrate phosphorylation,
| details | | CFinderM000238 | Inositol_phosphate_metabolism
Phosphatidylinositol_signaling_system
Phagosome
Ribosome_biogenesis_in_eukaryotes
| details | | CFinderM000319 | nucleoside_diphosphate_phosphorylation
carbohydrate phosphorylation,
histone_H4_acetylation
UTP biosynthetic process,
CTP biosynthetic process,
histone_H2A_acetylation
GTP biosynthetic process,
aromatic amino acid family metabolic process,
chromatin remodeling,
| details | | CFinderM000363 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
aromatic amino acid family biosynthetic process,
3-dehydroquinate synthase activity,
ribonucleoside_binding
transcription, DNA-dependent,
DNA-directed RNA polymerase activity,
| details | | CFinderM000527 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
3-dehydroquinate synthase activity,
regulation_of_cell_cycle
aromatic amino acid family biosynthetic process,
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
protein_kinase_binding
| details | | CFinderM000606 | histone_H2A_acetylation
CTP biosynthetic process,
histone_H4_acetylation
protein neddylation,
nucleoside_diphosphate_phosphorylation
UTP biosynthetic process,
GTP biosynthetic process,
carbohydrate phosphorylation,
chromatin remodeling,
| details | | CFinderM000638 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
aromatic amino acid family biosynthetic process,
3-dehydroquinate synthase activity,
B3 Transcription_Regulator(from PlantTFDB)
SNF2 Transcription_Regulator(from iTAK)
Others Transcription_Regulator(from iTAK)
| details | | CFinderM000788 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
3-dehydroquinate synthase activity,
B3-ARF Transcription_Regulator(from iTAK)
ARF Transcription_Regulator(from PlantTFDB)
cytoplasm,
protein complex,
aromatic amino acid family biosynthetic process,
response to hormone stimulus,
protein polymerization,
Plant_hormone_signal_transduction
| details | | CFinderM000939 | microtubule-based movement,
microtubule associated complex,
Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
microtubule motor activity,
aromatic amino acid family biosynthetic process,
3-dehydroquinate synthase activity,
minus-end-directed_microtubule_motor_activity
RNA_degradation
| details | | CFinderM000966 | TKL-Pl-1 (from iTAK)
CMGC_CDK-CRK7-CDK9 (from iTAK)
protein phosphorylation,
chloride transport,
CAMK_CAMKL-CHK1 (from iTAK)
transferase activity, transferring phosphorus-containing groups,
voltage-gated chloride channel activity,
protein kinase activity,
ion channel activity,
ATP binding,
| details | | CFinderM000967 | TKL-Pl-1 (from iTAK)
GH17 Glycoside_Hydrolases
phosphate-containing compound metabolic process,
phospholipid transport,
magnesium ion binding,
| details | | CFinderM000998 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
Lysine_degradation
HB-other Transcription_Regulator(from PlantTFDB)
histone_methylation
histone_lysine_methylation
aromatic amino acid family biosynthetic process,
SET Transcription_Regulator(from iTAK)
| details | | CFinderM001002 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
aromatic amino acid family biosynthetic process,
cytokinesis
microtubule cytoskeleton organization,
3-dehydroquinate synthase activity,
| details | | CFinderM001059 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
3-dehydroquinate synthase activity,
SNARE_interactions_in_vesicular_transport
Golgi vesicle transport,
aromatic amino acid family biosynthetic process,
phosphatidylinositol metabolic process,
RNA_degradation
| details | | CFinderM001179 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
aromatic amino acid family biosynthetic process,
| details | | CFinderM001197 | Ribosome
translation,
G2-like Transcription_Regulator(from PlantTFDB)
GARP-G2-like Transcription_Regulator(from iTAK)
L-ascorbic acid binding,
structural constituent of ribosome,
Arginine_and_proline_metabolism
| details | | CFinderM001280 | GH17 Glycoside_Hydrolases
Arginine_and_proline_metabolism
phospholipid transport,
| details | | CFinderM001399 | RNA_transport
Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
3-dehydroquinate synthase activity,
Base_excision_repair
| details | | CFinderM001400 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
3-dehydroquinate synthase activity,
ribonuclease H activity,
DNA photolyase activity,
cytokinesis
aromatic amino acid family biosynthetic process,
microtubule cytoskeleton organization,
RNA metabolic process,
DNA_replication
microtubule binding,
ubiquitin ligase complex,
Ubiquitin_mediated_proteolysis
protein ubiquitination,
DNA repair,
| details | | CFinderM001471 | regulation of translational initiation,
eukaryotic translation initiation factor 3 complex,
WRKY Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001597 | Phosphatidylinositol_signaling_system
Inositol_phosphate_metabolism
phosphatidylinositol metabolic process,
phosphatidylinositol phosphate kinase activity,
Phagosome
cellular protein metabolic process,
C3H Transcription_Regulator(from PlantTFDB)
membrane,
| details | | CFinderM001655 | transport,
transmembrane transport,
regulation_of_cell_cycle
transporter activity,
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
| details | | CFinderM001658 | Phosphatidylinositol_signaling_system
Inositol_phosphate_metabolism
phosphatidylinositol metabolic process,
phosphatidylinositol phosphate kinase activity,
Phagosome
cellular protein metabolic process,
TKL-Pl-6 (from iTAK)
| details | | CFinderM001692 | TKL-Pl-4 (from iTAK)
carbohydrate phosphorylation,
Ribosome
translation,
galactose metabolic process,
intracellular,
galactokinase activity,
Galactose_metabolism
Amino_sugar_and_nucleotide_sugar_metabolism
structural constituent of ribosome,
kinase activity,
| details | | CFinderM001693 | translation,
Ribosome
structural constituent of ribosome,
intracellular,
| details | | CFinderM001703 | Endocytosis
regulation of ARF GTPase activity,
ARF GTPase activator activity,
| details | | CFinderM001735 | TALE Transcription_Regulator(from PlantTFDB)
HB-BELL Transcription_Regulator(from iTAK)
| details | | CFinderM001769 | double-strand break repair,
regulation of actin filament polymerization,
DNA metabolic process,
cytoskeleton,
endonuclease activity,
exonuclease activity,
| details | | CFinderM001809 | Lipoic_acid_metabolism
TKL-Pl-6 (from iTAK)
chloroplast,
lipoate biosynthetic process,
lipoate synthase activity,
| details | | CFinderM001854 | HSF Transcription_Regulator(from PlantTFDB)
fatty-acyl-CoA binding,
| details | | CFinderM001877 | HD-ZIP Transcription_Regulator(from PlantTFDB)
HB-BELL Transcription_Regulator(from iTAK)
HB-HD-ZIP Transcription_Regulator(from iTAK)
TALE Transcription_Regulator(from PlantTFDB)
membrane,
| details |
4.Expression profilings |
