|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | large ribosomal subunit, | 0.027750191 | GO:0015934 | | intracellular, | 0.027750191 | GO:0005622 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000176G1170 | Tetratricopeptide repeat (TPR)-like superfamily protein | AT1G08070 (2.00E-146) | | PH01000474G0310 | - | AT1G03250 (6.00E-70) | | PH01000957G0300 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | AT2G28600 (1.10E-75) | | PH01001148G0360 | Acyl-CoA N-acyltransferases (NAT) superfamily protein | AT5G16800 (1.00E-49) | | PH01001239G0400 | Ribosomal protein L1p/L10e family | AT5G22440 (6.10E-92) | | PH01001649G0250 | prohibitin 2 | AT1G03860 (8.00E-122) | | PH01001681G0160 | Ras-related small GTP-binding family protein | AT4G19640 (7.40E-86) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000144 | protein binding,
acid-amino acid ligase activity,
| details | | CFinderM000691 | ornithine carbamoyltransferase activity,
phosphoribosyl-AMP cyclohydrolase activity,
ornithine_metabolic_process
carboxyl- or carbamoyltransferase activity,
histone deacetylase activity,
histone deacetylation,
Histidine_metabolism
histidine biosynthetic process,
Arginine_and_proline_metabolism
cellular amino acid metabolic process,
cellular protein metabolic process,
amino acid binding,
| details | | CFinderM000925 | Ribosome
translation,
fructose_6-phosphate_metabolic_process
Fructose_and_mannose_metabolism
GARP-G2-like Transcription_Regulator(from iTAK)
G2-like Transcription_Regulator(from PlantTFDB)
diphosphate-fructose-6-phosphate 1-phosphotransferase activity,
structural constituent of ribosome,
large ribosomal subunit,
6-phosphofructokinase complex,
6-phosphofructokinase activity,
| details | | CFinderM001019 | protein transport,
| details | | CFinderM001086 | Pantothenate_and_CoA_biosynthesis
tRNA processing,
methyltransferase activity,
| details | | CFinderM001105 | Endocytosis
pseudouridine synthesis,
RNA modification,
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
protein_kinase_binding
pseudouridine synthase activity,
| details | | CFinderM001106 | Endocytosis
| details | | CFinderM001149 | ketol-acid reductoisomerase activity,
branched chain family amino acid biosynthetic process,
cellular amino acid biosynthetic process,
SCY1_SCYL2 (from iTAK)
coenzyme binding,
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor,
Endocytosis
| details | | CFinderM001206 | Riboflavin_metabolism
riboflavin kinase activity,
riboflavin biosynthetic process,
bZIP Transcription_Regulator(from PlantTFDB)
nucleosome assembly,
| details | | CFinderM001212 | SCY1_SCYL2 (from iTAK)
Ribosome
translation,
structural constituent of ribosome,
| details | | CFinderM001469 | FAR1 Transcription_Regulator(from PlantTFDB)
CMGC_CDK-CRK7-CDK9 (from iTAK)
RNA_degradation
membrane,
| details | | CFinderM001568 | FAR1 Transcription_Regulator(from PlantTFDB)
RLK-Pelle_LRR-XV (from iTAK)
| details | | CFinderM001582 | cellular_homeostasis
Peroxisome
mitochondrial outer membrane,
protein methylation,
| details | | CFinderM001718 | phosphoribosyl-AMP cyclohydrolase activity,
histidine biosynthetic process,
RNA modification,
pseudouridine synthesis,
nuclear pore,
| details | | CFinderM001719 | nuclear pore,
RNA modification,
pseudouridine synthesis,
pseudouridine synthase activity,
Ribosome_biogenesis_in_eukaryotes
RNA_transport
| details | | CFinderM001720 | RNA_polymerase_II_transcription_cofactor_activity
NAD+ ADP-ribosyltransferase activity,
mediator complex,
nuclear pore,
regulation of transcription from RNA polymerase II promoter,
protein transport,
| details | | CFinderM001722 | GTP_catabolic_process
small GTPase mediated signal transduction,
protein transport,
signal transduction,
GTPase activity,
GTP binding,
large ribosomal subunit,
intracellular,
membrane,
nucleocytoplasmic transport,
| details | | CFinderM001753 | Endocytosis
HSF Transcription_Regulator(from PlantTFDB)
single-stranded DNA binding,
| details | | CFinderM001808 | protein binding,
Peroxisome
RNA_degradation
Endocytosis
| details | | CFinderM001831 | | details | | CFinderM001832 | histone deacetylation,
Endocytosis
histone deacetylase activity,
cellular protein metabolic process,
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
NAD+ ADP-ribosyltransferase activity,
| details |
4.Expression profilings |
