CFinderM001780's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
S-adenosylmethionine_biosynthetic_process0.003936515GO:0006556
Cysteine_and_methionine_metabolism0.014355164KEGG
bZIP Transcription_Regulator(from PlantTFDB)0.03012873GFam
methionine adenosyltransferase activity,0.033408831GO:0004478

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000005G1170THUMP domain-containing proteinAT5G12410 (7.40E-82)
PH01000045G1370-AT5G45410 (4.20E-89)
PH01000068G0070Basic-leucine zipper (bZIP) transcription factor family proteinAT2G40950 (3.30E-66)
PH01000207G0080S-adenosylmethionine synthetase 2AT4G01850 (0)
PH01001807G0490Protein prenylyltransferase superfamily proteinAT5G17270 (8.00E-132)
PH01001930G0090RNA helicase family proteinAT4G18465 (3.00E-167)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM001252SET Transcription_Regulator(from iTAK)
eukaryotic translation initiation factor 3 complex,
RNA_transport
protein binding,
details
CFinderM001429negative_regulation_of_transcription,_DNA-templated
FMN binding,
details
CFinderM001483eukaryotic translation initiation factor 3 complex,
cytoplasm,
valyl-tRNA aminoacylation,
aminoacyl-tRNA_editing_activity
valine-tRNA ligase activity,
guanyl nucleotide binding,
G-protein_beta/gamma-subunit_complex_binding
G-protein coupled receptor signaling pathway,
Aminoacyl-tRNA_biosynthesis
details
CFinderM001585bZIP Transcription_Regulator(from PlantTFDB)
details
CFinderM001623Ribosome_biogenesis_in_eukaryotes
ribosome biogenesis,
GTP binding,
details
CFinderM001730Alanine,_aspartate_and_glutamate_metabolism
TKL-Pl-2 (from iTAK)
carbamoyl_phosphate_biosynthetic_process
glutamine_catabolic_process
clathrin_coat
clathrin_coat_assembly
Pyrimidine_metabolism
bZIP Transcription_Regulator(from PlantTFDB)
details
CFinderM001755STE_STE7 (from iTAK)
nucleotide-sugar transport,
S-adenosylmethionine_biosynthetic_process
carbohydrate transport,
details
CFinderM001779pseudouridine synthesis,
RNA modification,
RNA binding,
binding,
pseudouridine synthase activity,
details
CFinderM001891Alanine,_aspartate_and_glutamate_metabolism
carbamoyl_phosphate_biosynthetic_process
glutamine_catabolic_process
clathrin_coat
membrane coat,
clathrin_coat_assembly
bZIP Transcription_Regulator(from PlantTFDB)
RNA metabolic process,
details

4.Expression profilings