1.Module annotation (GSEA enrichment result) Function Annotation | FDR | Gene Ontolog | Golgi vesicle transport, | 0.006184019 | GO:0048193 | vesicle-mediated transport, | 0.032063984 | GO:0016192 | Spliceosome | 0.035474674 | KEGG |
2.Module member annotation Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | PH01000238G0750 | associated molecule with the SH3 domain of STAM 3 | AT4G16144 (1.50E-96) | PH01001015G0430 | RNA-binding (RRM/RBD/RNP motifs) family protein | AT1G02840 (3.20E-60) | PH01001390G0320 | TLD-domain containing nucleolar protein | AT5G06260 (1.00E-144) | PH01002106G0290 | syntaxin of plants 61 | AT1G28490 (1.00E-54) | PH01003243G0030 | HIT-type Zinc finger family protein | AT5G37055 (1.40E-49) | PH01005933G0010 | decoy | AT1G14620 (6.20E-61) |
3.Direct connection functional modules Module ID | Function Annotation | Overlap condition | CFinderM000341 | exosome_(RNase_complex) COP9_signalosome
| details | CFinderM000454 | DNA replication, synthesis of RNA primer, DNA primase activity,
| details | CFinderM000886 | Spliceosome RNA_degradation
| details | CFinderM000909 | Homologous_recombination DNA_replication Mismatch_repair histone-lysine N-methyltransferase activity, single-stranded DNA binding, Golgi vesicle transport,
| details | CFinderM001039 | acetyl-CoA carboxylase activity, biotin_carboxylase_activity Fatty_acid_biosynthesis Propanoate_metabolism Pyruvate_metabolism cytokinesis microtubule cytoskeleton organization, ligase activity, microtubule binding,
| details | CFinderM001109 | RLK-Pelle_LRR-VI-2 (from iTAK) regulation of Rab GTPase activity, Spliceosome
| details | CFinderM001171 | COPII_vesicle_coating
| details | CFinderM001372 | Spliceosome GT32 GlycosylTransferases Golgi stack, AGC_NDR (from iTAK) GTnc GlycosylTransferases thiol oxidase activity, nucleotide binding, snRNA_binding
| details | CFinderM001373 | GTnc GlycosylTransferases phospholipid transport, cellular metabolic process, cation transport,
| details | CFinderM001610 | Sphingolipid_metabolism alpha-Linolenic_acid_metabolism carboxylic acid metabolic process, catalytic activity, carboxy-lyase activity,
| details | CFinderM001814 | Spliceosome nucleotide binding, snRNA_binding nuclear mRNA splicing, via spliceosome, phospholipid transport, phospholipid-translocating ATPase activity, cation transport,
| details |
4.Expression profilings |