1.Module annotation (GSEA enrichment result) Function Annotation | FDR | Gene Ontolog | protein binding, | 0.02119239 | GO:0005515 | Peroxisome | 0.037162064 | KEGG | RNA_degradation | 0.037162064 | KEGG | Endocytosis | 0.037162064 | KEGG |
2.Module member annotation Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | PH01000054G1240 | Pentatricopeptide repeat (PPR) superfamily protein | AT5G42450 (3.00E-143) | PH01000682G0550 | heat shock factor binding protein | AT4G15802 (1.70E-12) | PH01000852G0380 | peroxin 5 | AT5G56290 (0.00E+00) | PH01001235G0180 | RNA binding (RRM/RBD/RNP motifs) family protein | AT5G60170 (2.00E-108) | PH01001269G0070 | associated molecule with the SH3 domain of STAM 3 | AT4G16144 (2.00E-119) | PH01001649G0250 | prohibitin 2 | AT1G03860 (8.00E-122) |
3.Direct connection functional modules Module ID | Function Annotation | Overlap condition | CFinderM000341 | exosome_(RNase_complex) COP9_signalosome
| details | CFinderM000746 | CMGC_DYRK-YAK (from iTAK) TKL-Pl-6 (from iTAK)
| details | CFinderM000967 | TKL-Pl-1 (from iTAK) GH17 Glycoside_Hydrolases phosphate-containing compound metabolic process, phospholipid transport, magnesium ion binding,
| details | CFinderM001105 | Endocytosis pseudouridine synthesis, RNA modification, regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity protein_kinase_binding pseudouridine synthase activity,
| details | CFinderM001106 | Endocytosis
| details | CFinderM001149 | ketol-acid reductoisomerase activity, branched chain family amino acid biosynthetic process, cellular amino acid biosynthetic process, SCY1_SCYL2 (from iTAK) coenzyme binding, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, Endocytosis
| details | CFinderM001206 | Riboflavin_metabolism riboflavin kinase activity, riboflavin biosynthetic process, bZIP Transcription_Regulator(from PlantTFDB) nucleosome assembly,
| details | CFinderM001212 | SCY1_SCYL2 (from iTAK) Ribosome translation, structural constituent of ribosome,
| details | CFinderM001469 | FAR1 Transcription_Regulator(from PlantTFDB) CMGC_CDK-CRK7-CDK9 (from iTAK) RNA_degradation membrane,
| details | CFinderM001568 | FAR1 Transcription_Regulator(from PlantTFDB) RLK-Pelle_LRR-XV (from iTAK)
| details | CFinderM001720 | RNA_polymerase_II_transcription_cofactor_activity NAD+ ADP-ribosyltransferase activity, mediator complex, nuclear pore, regulation of transcription from RNA polymerase II promoter, protein transport,
| details | CFinderM001753 | Endocytosis HSF Transcription_Regulator(from PlantTFDB) single-stranded DNA binding,
| details | CFinderM001761 | large ribosomal subunit, intracellular,
| details | CFinderM001781 | RLK-Pelle_LRR-XV (from iTAK) RNA_degradation copper ion transport, C3H Transcription_Regulator(from PlantTFDB) copper-transporting_ATPase_activity protein binding,
| details | CFinderM001783 | RLK-Pelle_LRR-XV (from iTAK) RNA_degradation zinc ion binding,
| details | CFinderM001801 | GH17 Glycoside_Hydrolases phospholipid transport, phosphatidylinositol metabolic process, Inositol_phosphate_metabolism Phosphatidylinositol_signaling_system RNA_degradation Arginine_and_proline_metabolism Phagosome
| details | CFinderM001832 | histone deacetylation, Endocytosis histone deacetylase activity, cellular protein metabolic process, regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity NAD+ ADP-ribosyltransferase activity,
| details |
4.Expression profilings |