CFinderM001808's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     

Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
protein binding,0.02119239GO:0005515
Peroxisome0.037162064KEGG
RNA_degradation0.037162064KEGG
Endocytosis0.037162064KEGG

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000054G1240Pentatricopeptide repeat (PPR) superfamily proteinAT5G42450 (3.00E-143)
PH01000682G0550heat shock factor binding proteinAT4G15802 (1.70E-12)
PH01000852G0380peroxin 5AT5G56290 (0.00E+00)
PH01001235G0180RNA binding (RRM/RBD/RNP motifs) family proteinAT5G60170 (2.00E-108)
PH01001269G0070associated molecule with the SH3 domain of STAM 3AT4G16144 (2.00E-119)
PH01001649G0250prohibitin 2AT1G03860 (8.00E-122)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000341exosome_(RNase_complex)
COP9_signalosome
details
CFinderM000746CMGC_DYRK-YAK (from iTAK)
TKL-Pl-6 (from iTAK)
details
CFinderM000967TKL-Pl-1 (from iTAK)
GH17 Glycoside_Hydrolases
phosphate-containing compound metabolic process,
phospholipid transport,
magnesium ion binding,
details
CFinderM001105Endocytosis
pseudouridine synthesis,
RNA modification,
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
protein_kinase_binding
pseudouridine synthase activity,
details
CFinderM001106Endocytosis
details
CFinderM001149ketol-acid reductoisomerase activity,
branched chain family amino acid biosynthetic process,
cellular amino acid biosynthetic process,
SCY1_SCYL2 (from iTAK)
coenzyme binding,
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor,
Endocytosis
details
CFinderM001206Riboflavin_metabolism
riboflavin kinase activity,
riboflavin biosynthetic process,
bZIP Transcription_Regulator(from PlantTFDB)
nucleosome assembly,
details
CFinderM001212SCY1_SCYL2 (from iTAK)
Ribosome
translation,
structural constituent of ribosome,
details
CFinderM001469FAR1 Transcription_Regulator(from PlantTFDB)
CMGC_CDK-CRK7-CDK9 (from iTAK)
RNA_degradation
membrane,
details
CFinderM001568FAR1 Transcription_Regulator(from PlantTFDB)
RLK-Pelle_LRR-XV (from iTAK)
details
CFinderM001720RNA_polymerase_II_transcription_cofactor_activity
NAD+ ADP-ribosyltransferase activity,
mediator complex,
nuclear pore,
regulation of transcription from RNA polymerase II promoter,
protein transport,
details
CFinderM001753Endocytosis
HSF Transcription_Regulator(from PlantTFDB)
single-stranded DNA binding,
details
CFinderM001761large ribosomal subunit,
intracellular,
details
CFinderM001781RLK-Pelle_LRR-XV (from iTAK)
RNA_degradation
copper ion transport,
C3H Transcription_Regulator(from PlantTFDB)
copper-transporting_ATPase_activity
protein binding,
details
CFinderM001783RLK-Pelle_LRR-XV (from iTAK)
RNA_degradation
zinc ion binding,
details
CFinderM001801GH17 Glycoside_Hydrolases
phospholipid transport,
phosphatidylinositol metabolic process,
Inositol_phosphate_metabolism
Phosphatidylinositol_signaling_system
RNA_degradation
Arginine_and_proline_metabolism
Phagosome
details
CFinderM001832histone deacetylation,
Endocytosis
histone deacetylase activity,
cellular protein metabolic process,
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
NAD+ ADP-ribosyltransferase activity,
details

4.Expression profilings